Dpla008427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drepanosiphum platanoidis
Gene Symbol
-
Assembly
GCA_948098885.1
Location
OX402528.1:24734049-24737627[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.054 4.3 7.8 0.4 1 20 39 58 39 60 0.93
2 29 1.3e-06 0.0001 22.3 1.5 1 23 96 118 96 118 0.99
3 29 7e-06 0.00056 20.0 1.8 1 23 124 146 124 146 0.98
4 29 0.00023 0.018 15.2 3.3 1 23 152 174 152 174 0.99
5 29 3.7e-06 0.0003 20.9 2.5 1 23 180 202 180 202 0.99
6 29 1.9e-06 0.00015 21.8 2.6 1 23 208 230 208 230 0.99
7 29 4.4e-06 0.00036 20.6 1.6 1 23 236 258 236 258 0.98
8 29 1.8e-06 0.00014 21.9 1.7 1 23 264 286 264 286 0.98
9 29 2.1e-06 0.00017 21.7 0.4 1 23 292 314 292 314 0.97
10 29 0.42 34 5.0 5.2 3 23 439 461 437 461 0.81
11 29 5.8e-06 0.00046 20.3 1.3 1 23 467 489 467 489 0.99
12 29 2.6e-06 0.0002 21.4 1.2 1 23 495 517 495 517 0.99
13 29 6.4e-05 0.0051 17.0 6.5 1 23 523 545 523 545 0.98
14 29 0.00098 0.078 13.3 1.6 1 23 551 573 551 573 0.94
15 29 3.6e-05 0.0029 17.8 0.2 1 23 579 601 579 601 0.97
16 29 0.00017 0.014 15.6 4.0 1 23 627 649 627 649 0.98
17 29 8e-06 0.00064 19.8 1.5 1 23 655 677 655 677 0.99
18 29 5.3e-05 0.0042 17.3 0.6 1 23 683 705 683 705 0.98
19 29 1.6e-07 1.3e-05 25.2 0.4 1 23 711 733 711 733 0.99
20 29 2.9e-05 0.0024 18.1 0.5 1 23 828 851 828 851 0.97
21 29 1.3e-06 0.00011 22.3 0.9 2 23 885 906 884 906 0.97
22 29 6.9e-07 5.5e-05 23.2 3.7 1 23 912 934 912 934 0.99
23 29 3.2e-06 0.00026 21.1 1.3 1 23 940 962 940 962 0.99
24 29 0.0009 0.072 13.4 0.8 1 23 968 991 968 991 0.98
25 29 0.00087 0.069 13.4 3.7 1 23 997 1019 997 1019 0.98
26 29 0.00025 0.02 15.1 4.3 1 23 1025 1047 1025 1048 0.96
27 29 1.5e-05 0.0012 19.0 1.1 1 23 1074 1096 1074 1096 0.99
28 29 5.3e-06 0.00043 20.4 2.4 1 23 1102 1124 1102 1125 0.95
29 29 0.086 6.9 7.2 0.1 3 20 1160 1179 1159 1181 0.90

Sequence Information

Coding Sequence
ATGACAGAACTCATAATAGAAGCAGGAGTTGACGATGAACCATTTCAAAATCCAAGTGAGTCCATGCATTTTGAAATGGTGGAAGGCGAAGAAGAAACAATTTTGCCACAAGAATATATTTGCAATAAGTGTGAAATTGTATACTACAAACGTTCACAAATAGTGAGACATTTCAAATTATCCTATTGTGAGACAAAACCTTTGATTACTTATAAAGTAGTTCCTATAATCAAAAAATTACCAGGCTTAACAAAATATAAACATCCCTATTTTAAGTATaaactttaccagtgtgaagtttgttcaaaatcttttccaaacaagataaaattaacccagcacactcggacacataatgcagaaaaaatatatttttgtgaaatttgccaaaaagaattttctagctcttatagtttgaagagtcatggaaaaactcattctggagaaaaaccttatgtatgtgatatttgtcaaaaagcttttgctcattcacatattttaacaaatcataaaagaactcactcaggagaaaaaccatttaaatgtgaactttgtcaaaaatgttttgccacttctggaacactagtagcacacaaacgtacacatacaggagaacaaccatatacatgcaatatatgtcaaaagacattttccttatccagtagtttgagttcacacaaacgaactcatactggcgatagacctcataaatgcaatttttgtccaaaagcatttgcaaagagtggtgatttggagaggcataaacgaatacacacaggcgtgaaaccttttcattgtgatgtctgtaacaagtcttttacacagtcatctggcttaatcatacacaaaagaattcacactggtgaaaggccgtttgcatgtgattcatgtgaccgttcattcactaattcagctagtttgatagcacacaagagaactcacacaggggaaaTACCTCATATGCCTCTATATGTTCTTAATGCACAGCAAGTTCCAGCTAGTCAAAACAATAAAGAAAAAAATGTATTTTCAGAAATACCAACATCAACCACGACAGGTTTATGGGACACTATTGTACCAGCACCGTCAGTTGGAGATTTTAGTTACAATTGGTCTAATTGGTTTCAAGGTGAAACAGATCCTAGTAATGTTAAAGATCCGATTCAGAATACCGGTGAACAACCAGCAACATATACACAGCCTGAGTATAATGGTAGAGAAAATATGGATAATACAAGTTTAATGAATGGATTTAGTACAACTTCAGTTAAAAATGTTACCCCCATTAAAAGACCAGAAGGTCGTTGGTTGGATtgtgatgtgtgccataaaatgtttccttactcgtccagacataaactaattgaacaccaacggactcacactcgtgaaaaaccattcaagtgtctaatatgtcaaaaatcgttctcattatccagtactttgattgtacataaaagaatgcactctggagagagaccattcaaatgtgatttatgttctaaagcgtttgctcaaaaatctaagttaaatatacataaaagagttcatactggtataaaaccatttcattgtaatttatgtcaaaaaacttttgctcattcctcaaatctatccgatcataaaaaaactcacacccatgaaagaccatatgaatgtgatatttgccacaagttatttacgcttgcaaacagtctaagaaaacataaagtattacacactggatataagccatatgtatgtgaaatttgtcaaaaagcatttgctaaaaaagctagtttagaccgccacaagggtacacatgatggtgtaccacagtggacaaaaccatttacacacaccacaaaagaaaaacgaatgaataacaatgaaaagccttttaaatgtcatatttgttttaaatcattttctagcttgaatggaatgactagacatacagccaaacataatggacaagatcaatatcaatgtgaagtgtgccacaaaagtttcacaggcttgtcagtactgattagacataaacgaatacacacaggagagaaaccatttcagtgtgattattgtcccaagagttttgcttattcttcgatactagtaactcacaaacgtattcatacaggagagaaaccttaccagtgtgatatttgtcccaaagcatacacacaatcatccagtttgattgttcataagcgaactcatTGGAATCAACAGCCAATCAACACAACTGAACAACCAAAGTGGTATAATCTACCGGTTGGTGAGCCAAGGACTACTCAATATGAATTGCCAAACACATCAGCAACAGACGATTACACAGACAATTGGTCGGGTTGGTATCCTACTGAACCTGATATGTCTCTTGTTGAAAACGAACTACCACAAATTATACAAAACCCCGTCGAGAAGCCTTTACAGATTGAAGTGGATCCTGTACCTGTTCAAATTTCTAATAACCAGAATGTAAAACCTATGCCACAAAAGTTTAAGTGCGCCAAATGTAAAGAAAGTTTTGATGAAAGTTCATTATTATTAAAACATATTAGAGAAATTCATAGGCCTAATGTGAACAAAGTAAAAAAAACCAAAACAACACCCACATTAAAAAATGCCACTATGaaacataaaaaaaaacgtggtgaacgccaacgtctacaatgcgatatttgccaaagaccgttcagtgactcatataagttaaaagttcataggcgaactcatacccaagaaaaaccgtttaaatgtgatatttgtgaaaagtcatttactaattcctgtaatctaaaagaacatcagaaagtacatacaggcgaaaaactattcgaatgtgacatctgtcagaagacttttatgcagctgggtacattgactacacacagacgtacgcatactggtgaaaaaccctatagttgtgatgtttgtcaaatgacatttgcattattaagtagcatgaaaacacataaacggcgagcacacactggcgaaaagcctcataagtgtgatttctgtctgaaagcatttgtcaagcgtaacgatatgatccgtcaccgaaggacgcatactggagagcgcccatttgtatgtgacatatgtcatcagtctttcactcaatcatatgttctagttttacacaaaagaaaacatcatttgggtgataaggcttttacggaaaatcacagtggtccaattgcagtaaaacgtactgtccctaaagataaaccattcaaatgtgatatttgcatcaaatcattcgcaagccaatcgacattaaatacacataaacgaatacatactggggaaaaaccatttcattgtgacatgtgcccaaagtcgttcacacaatcgtcgggtctcattgcacataaagctactcatcaccctgtggaaaagtcgtttgaagaaaatgccacgccacagcagtttgtcagtactactaacttgtacacgcacaaaagacctcaGTATGCTGGCGATAGACCTTGTGAATATGGCATTTGTCAATCATCTTTCAGTCAACCTTCCTCTATGAATACACACTTTAATCAATCCATGATGCCCGACGGTAATATGTATTACACATAA
Protein Sequence
MTELIIEAGVDDEPFQNPSESMHFEMVEGEEETILPQEYICNKCEIVYYKRSQIVRHFKLSYCETKPLITYKVVPIIKKLPGLTKYKHPYFKYKLYQCEVCSKSFPNKIKLTQHTRTHNAEKIYFCEICQKEFSSSYSLKSHGKTHSGEKPYVCDICQKAFAHSHILTNHKRTHSGEKPFKCELCQKCFATSGTLVAHKRTHTGEQPYTCNICQKTFSLSSSLSSHKRTHTGDRPHKCNFCPKAFAKSGDLERHKRIHTGVKPFHCDVCNKSFTQSSGLIIHKRIHTGERPFACDSCDRSFTNSASLIAHKRTHTGEIPHMPLYVLNAQQVPASQNNKEKNVFSEIPTSTTTGLWDTIVPAPSVGDFSYNWSNWFQGETDPSNVKDPIQNTGEQPATYTQPEYNGRENMDNTSLMNGFSTTSVKNVTPIKRPEGRWLDCDVCHKMFPYSSRHKLIEHQRTHTREKPFKCLICQKSFSLSSTLIVHKRMHSGERPFKCDLCSKAFAQKSKLNIHKRVHTGIKPFHCNLCQKTFAHSSNLSDHKKTHTHERPYECDICHKLFTLANSLRKHKVLHTGYKPYVCEICQKAFAKKASLDRHKGTHDGVPQWTKPFTHTTKEKRMNNNEKPFKCHICFKSFSSLNGMTRHTAKHNGQDQYQCEVCHKSFTGLSVLIRHKRIHTGEKPFQCDYCPKSFAYSSILVTHKRIHTGEKPYQCDICPKAYTQSSSLIVHKRTHWNQQPINTTEQPKWYNLPVGEPRTTQYELPNTSATDDYTDNWSGWYPTEPDMSLVENELPQIIQNPVEKPLQIEVDPVPVQISNNQNVKPMPQKFKCAKCKESFDESSLLLKHIREIHRPNVNKVKKTKTTPTLKNATMKHKKKRGERQRLQCDICQRPFSDSYKLKVHRRTHTQEKPFKCDICEKSFTNSCNLKEHQKVHTGEKLFECDICQKTFMQLGTLTTHRRTHTGEKPYSCDVCQMTFALLSSMKTHKRRAHTGEKPHKCDFCLKAFVKRNDMIRHRRTHTGERPFVCDICHQSFTQSYVLVLHKRKHHLGDKAFTENHSGPIAVKRTVPKDKPFKCDICIKSFASQSTLNTHKRIHTGEKPFHCDMCPKSFTQSSGLIAHKATHHPVEKSFEENATPQQFVSTTNLYTHKRPQYAGDRPCEYGICQSSFSQPSSMNTHFNQSMMPDGNMYYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-