Basic Information

Gene Symbol
ZIPIC
Assembly
GCA_945859695.1
Location
CAMAOO010000020.1:1312549-1334819[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.18 11 6.9 1.1 1 23 179 202 179 202 0.96
2 21 0.0027 0.17 12.5 0.4 1 23 222 244 222 244 0.98
3 21 4e-05 0.0025 18.3 0.1 1 23 250 272 250 272 0.98
4 21 0.0071 0.44 11.2 0.3 2 23 278 300 277 300 0.95
5 21 0.0031 0.19 12.4 0.7 1 23 308 330 308 330 0.96
6 21 0.053 3.3 8.5 0.4 1 23 336 359 336 359 0.92
7 21 0.006 0.37 11.5 1.7 1 23 368 390 368 390 0.98
8 21 0.0011 0.07 13.7 0.1 1 23 396 419 396 419 0.94
9 21 1.5e-05 0.00095 19.6 4.2 1 23 425 447 425 447 0.98
10 21 0.00018 0.011 16.3 1.6 1 22 453 474 453 474 0.93
11 21 0.00011 0.0067 16.9 1.4 1 23 724 746 724 746 0.99
12 21 0.87 54 4.7 0.3 2 23 754 775 753 775 0.94
13 21 2.2 1.4e+02 3.4 2.1 1 21 779 799 779 802 0.79
14 21 0.00077 0.048 14.3 2.6 1 23 809 834 809 834 0.93
15 21 0.017 1 10.0 0.3 2 23 841 863 840 863 0.95
16 21 2.1e-05 0.0013 19.2 0.4 1 23 876 898 876 898 0.97
17 21 3e-05 0.0019 18.7 1.7 2 22 905 925 904 929 0.92
18 21 8.4e-05 0.0052 17.3 1.3 2 23 938 960 937 960 0.96
19 21 2.8e-05 0.0017 18.8 0.6 1 23 966 989 966 989 0.96
20 21 5.3e-05 0.0033 17.9 0.3 1 23 998 1020 998 1020 0.98
21 21 0.076 4.7 8.0 0.0 1 23 1026 1049 1026 1049 0.95

Sequence Information

Coding Sequence
ATGAATGGAATTTGTCGTTTGTGTTTTGTTATGAATAGGGAAAAAATGCACGCTTTACAGAATAATACCGAGATTTTATCTAAAATCTCTACTTGCTTCTCTATTAAGCTAATCTTGGAAGAGTCTTTACCCAAAAGTATTTGCAATAATTGTGTCATCAAAATAAACGATATATATGATTTTCAACGAAAAATTATTGAGACGGAACATAAGCTTCTACTCTACTTAAAAAATGGAGAACTATCAAAGAACATTCTCAAAAAATTTAATGATGAACTAAAATCAGACGAAGAAAAGCCTGAAAGTAAAGCTCACCCAAATGTAACCATTAAAGAAGAAAATTCAGAGAGATCATCATATATGGAGAACCGAAACCTGAGTTCAGATGAAGATATTCTACCTTCAACATTTAACAATCAAAATGCCAATAATAAAACTGAAATCAAATCAAAGTGTTATAAAAATATAAATAAAACATTATCCAGTACTGAAATACCATTGGAAATAACAAATAATATTGGCACCAATAAACAATTTAAATGTTTGACATGTTTCTCCATTTTTGAGAGCAAAATAGACCTTCTTACTCATTATTTATCACAGCATGGAGAAGGGAAGATGAATGAAGAATATACTGCACAAACAATTGATGGTGTACCGTCATATAGTTGTAATGAATGTAATGAAGTATATGAGAAGAAGAAATCTATTCTTAATCACGTAATTACACATCAGAAACAAAGGCCATTTACTTGTAATATGTGTGGCAGAGCATACAAGACACCAGCTGAGATTATCAGACACGGTAGAGTCCACAGCGGTGACCGGTTGATATGTCCTCAACACTGTGGATATACTACAGTTTACCGTGGAGCTATGAAAATGCACATCAGAGGACATAGTGAGAAGCCTGACTATAAGTATACCTGTGAGGAGTGTGGCAAGGGTTTCAACGTGAAAACTTGGCATGCCCAGCACCAGAATGTACACACTGGAGACAAGCCGTTTGTCTGCGATATCTGCGGGCTTGGATTCCATATGGACAGGTACCTGACATCGCACCGTAGTGCAGTCCACCCGCAGTCATCGGATGTCAAGCGCTACGTATGCTTGCACTGCCAACTGCCTTGCGACACCAGGAGGTCTCTGATCATGCATATGGAGGTACACGGAATAAAAGCGAGTTTCCTCTGCGACATCTGTGGCAAGATTGTGTCGAGCGCTGAAAAATTGAAGTACCACGAGAGGAATGAACATTTGGGATTAAAGCCACATACttgcagTGTATGTAACAAGTCGTTTGCCAAGAAGTTCAATCTAAAGTTGCATGAACGCACTCACACGGGAGAGCGAGCCCACGCGTGCGCCACCTGTGGGAAGACATACGTACAACGCAGCACGTTATTACGTCATCATAGAAGGCAATTGAATGATGTCTTGGAATATAGTGCAGAGTGCACTCAGAAACGGAAAGTGGCTGCTTTACCAGGCACTCGGCAAGGCCGCAGGTGCAGTCTCGCAGGGGGATTCCACTTACCTCCACCAGGGGGGAGGAGTCGGCGAGGAGAGGAGGAGGAGGAGAGAAGGATGGATTCCCTACCCTTATGTTACATTTGCAAGAGGATGGCACAACATGCAGAGCTATTCATGCAGAGTGTACTCAGTAATCAGATCTTATTAGCAAACTATCATAATATATTAGATGCATCACTACAAGCTGTGATATCACAAGTACAGCCTGTAATCAACCTATCTTGCCAAAAGGAAGTGCAAATACTGGAATATATACATGACTGTCAAGCAGCTACTGATGTCTTTGAAGTTATCACGAGCAAAACTCATAATAAGGTTGGCAATATAAAGATTGAATTTAAAAATGAGGATGATGAGCTATCAAATCTGGATGTGGAGtatattgacaactgtgaagAGTTCGACGATCAGTTGATAAAGGATGAGAAAGATGAGTTCCCATCAAAGAGGTTACGAAAAGCTCGAGGCTTCGACAAACCTATAAAAAAAACTAAAGTTACGAAGAAAAAACATAAACTCACTCATGACGACAATTTAATAATCGATCCAAAAATAGTAAAAATATACATAACTAAAACGCAATGTTTGGCGGAGCGTGAGAAGATGGCTACCGACTCCAAGTACTTGAGGTCTGCGTACAAGTGCGAGGATTGCTTAAAAGGATTCAGTTTTAAAGACGGCTACGACAAACATATGATGAAACATAGTGGGAGCAACGGCAGTATACAATGCGGGATCTGCAAGCAGCGAATGGACACGGAAGAAAAGTTGGCCCGCCACAATCAATACCATTATGTCCGATACAAGTGTCCTGAATGCGACCTGACACGCATCTGCCGGCAGACGCTGAGGGACCACTACACTGCCTTCCACTGCCAGGATCTGTACCAGTACGTCTGCACCCATCCTGGCTGCTTCAAAGTCTACAATCGGCAGTCTTCGCTCCGCAAGCACAAACTGCAGTCGCACAGATACAAGGAGCGTGTCTCCTGTCAGTTCTGTCTCAAGACTTACGTCACAAGGGAAGTGTTGAAGTCACACATAATCATGCAGCACCCTAAGGAAGTGTCTGAGAATGAGGTGCGCAAAAGCTTTGTGTGTCAGGAGTGCGGCATGGCATTCAAGATGCCCTCTCAGTTGAGCAAGCACAGCATGAAGCACACACATACCAAAAGCTCTTATTGTGTCGACTGCGACAAGAGTTTCAAATCGGAGTATTCTCTCAAGCATCATCTGAAGACAGCGTCGTCTCATGTCAACTATGACGAGTTACCCCTAGTCTGCTCCCACTGTGAAAAGAGGTTCGCGATCAAGAGGGACCTAGAGCGTCACATCAACAGGCTTCATCTCAACATAAAACCATATAAGTGTGACAAATGTGATAAGGCATATACAAACGCATGGTCGCTGATGGAACACAAGAGGTTCATCCACGAAGGGTACAAGCGACCGCTGAACTTCCCCTGCAACATTTGTGATAAGGTGTTCGATCGCAAGCAGATCTTGGTGTCGCACGTGCGCACGCACACAGGCGAGAGGCCGTTCGCGTGCGCGCGCTGCCCGGCCGCCTTCGCGCAGCGCGGCGTGCTGGCCACGCACGTGCGGCTCGTGCACCTGCGGCTGGCGCGCAACGGCCGCCCCAAGCACTGA
Protein Sequence
MNGICRLCFVMNREKMHALQNNTEILSKISTCFSIKLILEESLPKSICNNCVIKINDIYDFQRKIIETEHKLLLYLKNGELSKNILKKFNDELKSDEEKPESKAHPNVTIKEENSERSSYMENRNLSSDEDILPSTFNNQNANNKTEIKSKCYKNINKTLSSTEIPLEITNNIGTNKQFKCLTCFSIFESKIDLLTHYLSQHGEGKMNEEYTAQTIDGVPSYSCNECNEVYEKKKSILNHVITHQKQRPFTCNMCGRAYKTPAEIIRHGRVHSGDRLICPQHCGYTTVYRGAMKMHIRGHSEKPDYKYTCEECGKGFNVKTWHAQHQNVHTGDKPFVCDICGLGFHMDRYLTSHRSAVHPQSSDVKRYVCLHCQLPCDTRRSLIMHMEVHGIKASFLCDICGKIVSSAEKLKYHERNEHLGLKPHTCSVCNKSFAKKFNLKLHERTHTGERAHACATCGKTYVQRSTLLRHHRRQLNDVLEYSAECTQKRKVAALPGTRQGRRCSLAGGFHLPPPGGRSRRGEEEEERRMDSLPLCYICKRMAQHAELFMQSVLSNQILLANYHNILDASLQAVISQVQPVINLSCQKEVQILEYIHDCQAATDVFEVITSKTHNKVGNIKIEFKNEDDELSNLDVEYIDNCEEFDDQLIKDEKDEFPSKRLRKARGFDKPIKKTKVTKKKHKLTHDDNLIIDPKIVKIYITKTQCLAEREKMATDSKYLRSAYKCEDCLKGFSFKDGYDKHMMKHSGSNGSIQCGICKQRMDTEEKLARHNQYHYVRYKCPECDLTRICRQTLRDHYTAFHCQDLYQYVCTHPGCFKVYNRQSSLRKHKLQSHRYKERVSCQFCLKTYVTREVLKSHIIMQHPKEVSENEVRKSFVCQECGMAFKMPSQLSKHSMKHTHTKSSYCVDCDKSFKSEYSLKHHLKTASSHVNYDELPLVCSHCEKRFAIKRDLERHINRLHLNIKPYKCDKCDKAYTNAWSLMEHKRFIHEGYKRPLNFPCNICDKVFDRKQILVSHVRTHTGERPFACARCPAAFAQRGVLATHVRLVHLRLARNGRPKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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