Darc009823.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drepana arcuata
Gene Symbol
-
Assembly
GCA_016069955.1
Location
JACCPG010008936.1:12716-17456[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.18 15 6.6 0.2 1 23 195 218 195 218 0.96
2 16 7.1e-05 0.0061 17.4 1.5 2 23 223 244 222 244 0.97
3 16 0.0044 0.37 11.7 2.2 2 23 275 297 274 297 0.95
4 16 0.00089 0.076 13.9 1.2 2 23 353 375 352 375 0.96
5 16 0.0039 0.33 11.9 2.4 1 23 381 404 381 404 0.96
6 16 0.012 0.99 10.4 1.4 1 20 408 427 408 429 0.94
7 16 0.00015 0.013 16.4 0.5 2 23 478 499 477 499 0.98
8 16 1.5 1.3e+02 3.7 2.2 1 23 505 527 505 527 0.80
9 16 0.0017 0.15 13.0 0.6 2 23 533 553 533 553 0.97
10 16 0.22 18 6.4 0.7 1 23 558 580 558 580 0.97
11 16 0.04 3.4 8.7 0.3 2 23 586 606 585 606 0.96
12 16 0.54 46 5.1 3.0 2 23 621 642 620 642 0.95
13 16 9.8e-05 0.0084 16.9 3.1 1 23 648 670 648 670 0.98
14 16 6e-06 0.00051 20.7 1.4 2 23 677 698 676 698 0.97
15 16 0.015 1.3 10.0 3.1 1 16 704 719 704 727 0.78
16 16 4.4 3.8e+02 2.3 0.4 1 20 732 751 732 755 0.85

Sequence Information

Coding Sequence
ATGACTGAATTCAAAGCTGTGAAAAATCAAGGGAATGTTAGAGCCAAATTAGGACAACTTATGATGAAGCTGACGGATCATATTGACAAGTGCCTTGCAATGAAAACAAACATTAGAAATAGTTTAACTAACATCCTACATTCGGCAAAATTCTGTGGACTATGCCTGGAAACCTCTGAGCGATTGTCCTCTGTTGAAGAGCAATTTGATTTGCCTGTGCACCAACAAACACTTAGGATATCCTTATATGAAATTATATGCACTATATTTAAGGATGTTGAAAACATTATATGTAGCTACTATGTCTGCAGTAAATGCATAGACTCACTATTGCAATCATACAAGTTTATTGAGAACACAAGAAACATGACAAAAGTGATGCAAACTTATCTCAATGATTTTTACAACAAAGTGAATGATGTTGGAGATCTTTTGAAGTCGTCAGATGAACTAGACAGTTCAAATGTGGTAATTGTGTTAGGAGCTGATGATTCATCTAAAACAAACCTCGGTGAAGGCTTAGGGACTGATGTAATACAGGATGGGTCAGTCGAAAGTGGACCAGGAGATAAAAAGCAGGTATACATCTGTCGTGAATGCGATATAATTCTGCCTAACCTCAAGAAACTCGACCTACACCAGCTGAAATACCACAAAAAAGAACTCCAGTGTAAGTTTTGTCCGAAGAGTTTTATGAGTGTGAATAATTTAAACTTGCACTATAAGACGCATTCAGCAGTCTTGTGTAAAGTTTGTCACGATGTGGTCTTCCATGCCAAAATAGTGAGGCATTTGAAAGAGAACCATAAAGAATCTGTATGTTTTTGCAACATTTGTAACACTGTTTGTTATTCAGTAACCGCACTTGAAGCTCATATGAAAATCAGCCACAAAGACGTTGGATATGAAAGATGTGTACTGTGCTCGGAGAAGGTTGGGACCAAGACAGGTCACAGTTGCAAGCTGAAGTGTCCAGAGTGTAAAGAAATGCCATGTAAGCATTATAAATATTTAATGGCGTATAGAGAACAGATGGTGAAGCGGGAATCGAAAATTAAGTGTCTTGATTGTGACTATACATGCAGTAGAGAGAAGACATTAATAATACATGTTAATAAGGAACATTTGACGCGCCATTCCTATTCCTGCCATGATTGCTCACAGCAGTTTTATTCAAAGGACATACTCAAAACTCACATACAATTGTTACACATGGACAACTATAGATGTGAATTTTGTGACTCTATATTTAGCAGGAAGAAAAAGTATGAGGAGCACAGAGAGAAGTGTAAAAGGTTGTTTAAAGAGTTACCTGGTGATGAATATGCTCTGGATACTTCAAAGGAATTAGCAGAAGACAATAGACTGGCACTTGATGAGGAGGATTTCATTACTAGAATGCATAGCAAACCCATGGATATATTGAATGTTAAGTGTGGTATTTGTGATGCCTCATTTGACAGTAAGCGTACAATGCAATTACATCTTCGAAGGCACGGGCCTTCCATGGTATACCGCTGTAAAATATGCAATGCTGACTTTGATAATTTGAGGAAAGTCAGCTGTCATATCTATAGCCACTCATCCCCAAAGGCTACTTGCAAGATATGTGGCAAAGTGACCAAGGAAGTGTACCTTAAAAGACATTTAGAAACCCACCTACAGAAAATTTACTCTTGCCAGGCCTGTGGCAAGGATGTCAAGGGCATTACTCAATACAAATACCATTTGAAGCAACATAATATGAGTCGCGTTCCCTGCCCAGACTGTGGAATACTTTTACACCCTACGAGCTTACGGAAGCATCGCTTGAGACACAGAGATGCACCTGCCTCGGTTATTAATAAACAAAAAACTCTCAAATGTGAAGACTGTGAGTACACTACAACCAAAAAGACCCTTATTGAGTGTCACATGAATAAGCATAGGAAAGCTAAGCCATATATATGTCATATATGCAGTAAAGATTTCCCTGGTCGTCACCTCCTGCAGAGACACTTAACAACACACGATGCTACGCAGAGTGTTACGTGTAAGTTTTGTGGGAAGACCTTTGCTAATTGGCCTTGTTTGAAAATTCACTTGAGACTACATACAGGAAAGAAGCCGTATCATTGTAACGTTTGCGGGAAAAGTTTCAGGTCTTCAAAAATTTTGAAATTTCACAAAGATACAAAGCATTTGGATAAGAATTTCGCTTGCCCTGTTTGCTCGGACAAATTCCATACTATAAGAGAAATGAGGAGTCATGCTGTCAATGTTCATTGGGAGAAAAAAGATGAGAGGTTTGACCCTCGACTGTTGGAGGGATTGGATGAAAAGGACTATCACCTGTTTGACGATGGACCAGGGTCTATTATTGTAAATGATGATTTGGAGTTGTGTAAATCTCTATAA
Protein Sequence
MTEFKAVKNQGNVRAKLGQLMMKLTDHIDKCLAMKTNIRNSLTNILHSAKFCGLCLETSERLSSVEEQFDLPVHQQTLRISLYEIICTIFKDVENIICSYYVCSKCIDSLLQSYKFIENTRNMTKVMQTYLNDFYNKVNDVGDLLKSSDELDSSNVVIVLGADDSSKTNLGEGLGTDVIQDGSVESGPGDKKQVYICRECDIILPNLKKLDLHQLKYHKKELQCKFCPKSFMSVNNLNLHYKTHSAVLCKVCHDVVFHAKIVRHLKENHKESVCFCNICNTVCYSVTALEAHMKISHKDVGYERCVLCSEKVGTKTGHSCKLKCPECKEMPCKHYKYLMAYREQMVKRESKIKCLDCDYTCSREKTLIIHVNKEHLTRHSYSCHDCSQQFYSKDILKTHIQLLHMDNYRCEFCDSIFSRKKKYEEHREKCKRLFKELPGDEYALDTSKELAEDNRLALDEEDFITRMHSKPMDILNVKCGICDASFDSKRTMQLHLRRHGPSMVYRCKICNADFDNLRKVSCHIYSHSSPKATCKICGKVTKEVYLKRHLETHLQKIYSCQACGKDVKGITQYKYHLKQHNMSRVPCPDCGILLHPTSLRKHRLRHRDAPASVINKQKTLKCEDCEYTTTKKTLIECHMNKHRKAKPYICHICSKDFPGRHLLQRHLTTHDATQSVTCKFCGKTFANWPCLKIHLRLHTGKKPYHCNVCGKSFRSSKILKFHKDTKHLDKNFACPVCSDKFHTIREMRSHAVNVHWEKKDERFDPRLLEGLDEKDYHLFDDGPGSIIVNDDLELCKSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00468471;
90% Identity
iTF_00468471;
80% Identity
-