Darc017555.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010000434.1:15665-29482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0071 0.6 11.1 0.6 1 23 342 364 342 364 0.96 2 12 0.00021 0.018 15.9 2.3 2 23 372 393 371 393 0.96 3 12 7.7 6.6e+02 1.5 1.3 2 23 398 419 397 419 0.84 4 12 0.00031 0.027 15.3 0.5 1 23 424 447 424 447 0.96 5 12 0.021 1.8 9.6 0.1 2 23 453 475 452 475 0.96 6 12 0.74 63 4.7 1.0 2 20 482 500 481 502 0.91 7 12 0.085 7.2 7.7 0.0 2 20 513 531 512 533 0.92 8 12 0.012 1 10.3 7.0 1 23 541 564 541 564 0.95 9 12 0.00018 0.016 16.1 1.3 3 23 594 615 592 615 0.96 10 12 2.3e-06 0.00019 22.1 0.6 1 23 623 645 623 645 0.98 11 12 0.0017 0.15 13.0 3.0 1 23 651 673 651 673 0.96 12 12 0.00039 0.033 15.0 5.3 1 23 679 702 679 702 0.98
Sequence Information
- Coding Sequence
- ATGCAGCGAGCAGTATCGTATAAACAAAATATTGAATCTGATAGAATCTCAGTATGCCACGGATGTCTTGTAACCGGTGTTAAACTCTTTGATATGGTTGATTATAAGCTCAGAGAAACGTATTCGGACCTGATTGGAAGAAAGATTGACAGTATGGACACAGCACCACAATATATGTGTAGCTTCTGTACAAAGCACTTAATTAACTTCAATGCATTTCGGAGCAGATGTATACGTTCCCAGGAGTTGCTGGAAAATGCTCACCAAAAGAATATGCTGACACCAGAGTACATACAACAAATAGACAGAGCAATAAGTGGTCTAGTACTGCCATACACTACAACACCTATTAATATGTCTAACTACAATATGAATACTAATATAATTAAAGTAATTGAAGAAAACTCTGAAATGTATGATAATAAAGGTCTAAGGAAGGATGATCAGGATATTGATATAATAAAATGTGAAAATTATGAACAGATTGAAAAGGATTTAAAATATGATGAATATTCTCAAGTCGAGAATGTTGAAGGCAAATTCACTAAGACTGAAACAACATATCCAACCAACAAAGAATTTTCAGAAGTAAATCTTGTTGATTCTGGAGTTGTTCCTGATGAACATTTTAATGAGAATACTTTTGAAGATACTGATGTAATTAAATGTGAGATTAATGAAGATGCAGAAATATATTTAAAAGAAGATAGATATAGTGAATTTGAAAATGCTAAAGATCTTTCTAAAATCAACTTTTCAGAAGTTAATGTCCTTGATTCTAAAATGGTTGTAGATGGAAACTTAGAGAATAGTAAAAAGGATATAGTACAAATTAAATATGCCAAAAAAAATATTCACAAAAATACCTCTAACATTAAAACGAAGCAAAATGTATCAAAAGCTAATGTTAGGTGCGAAGAGTTAGGTAAGAAACTGAATGTAGTTGTTAAGTTATTGAGTAAGGAAGAACAAATTGGAGAACTGGAGAATAGGAAGTTGTCAAGTAACTATAGGCAAGCTACATACAAGTGCAACTTGTGCTACAAAGGCTATGTGGTAGAAGAAACCTATAAAAGTCACATGGTGTTACATAGTCCTAGCAGTGGGGACCTTATTTGCGACATCTGCAAGTGCAGGTTCAAGACCAAAGTGACACTGGCCTTGCACTTAAAGACCCATGAAATGATACTCACATGCAGGGATTGTGGACATATATCGACGCAAATACGGCTGGCCACGCTACATTTCAAATTTCACCAAGGTGCCAAATACCCGTGTCAATTTTGTCCGAAAGTTTACGATCGACGCACCACGTACTATTGGCATATGAAGGCTGCGCATGCGTCGTCGCTATTGCGCTGTGAGCTCTGCGGCGACGCGTTTAATGGCGCCTTTGGACTCAAAGCCCACGAACGGCGGACTCATACTATACCAAGCGACTGCGTGTGTATGCGGTGCGATTTGCAGTTTTATACGAAAGAAGCTTTCGATGCCCATCGCACGAACGACGATGGACACTGTAATTTAGAACTTAAGTCCTGCGTACGATGCGGAGCAACGTTCGCCACGACCGAGCTTCTGATACAACACGAGTTAGAACAGCAGAGGTCCGGGGTGCACTTTGAATGTTCACTGTGCAACAAGAAGTTCCATACGTTGGATTATTACAAGAAACACCATCTGAATAGTCACGCCGCGACCAAAGACTCTAAACGTAACTGCCGGCCCGTAAGAGATGTCAAAATTTGCAGGGATAAAACTGGCTCTTCTAGTCTGCTGTGCGAAATATGCGGGAAGACCACTAAGAGCAATGGACTCCTGAAGCTCCACCATCGTGCGAAGCATTCTACCAAGTACCTCTGGCCTCACCAGTGCAATGTATGCCCTAAAAGTTTCCGTGCACTTGCGCTACTGCAGGACCACATCAGGACTCATACGGGTGAGCGTCCATACCGCTGTCAGCTTTGCCCGAAGGCTTTTAACTGCAAGCAGAACCTTAAACGCCATAACATTGTGCATACTGGTGAGAGACCATACAAATGTCACGTTTGTGAGAAGAAATTCCAGACATCTTCTTGTGTTAAAGTGCATGTCAAAACTGTTCATATGAAGATACCGCAGCCATCTCGTACCAGAAAAAAGAAAGTTAATTGA
- Protein Sequence
- MQRAVSYKQNIESDRISVCHGCLVTGVKLFDMVDYKLRETYSDLIGRKIDSMDTAPQYMCSFCTKHLINFNAFRSRCIRSQELLENAHQKNMLTPEYIQQIDRAISGLVLPYTTTPINMSNYNMNTNIIKVIEENSEMYDNKGLRKDDQDIDIIKCENYEQIEKDLKYDEYSQVENVEGKFTKTETTYPTNKEFSEVNLVDSGVVPDEHFNENTFEDTDVIKCEINEDAEIYLKEDRYSEFENAKDLSKINFSEVNVLDSKMVVDGNLENSKKDIVQIKYAKKNIHKNTSNIKTKQNVSKANVRCEELGKKLNVVVKLLSKEEQIGELENRKLSSNYRQATYKCNLCYKGYVVEETYKSHMVLHSPSSGDLICDICKCRFKTKVTLALHLKTHEMILTCRDCGHISTQIRLATLHFKFHQGAKYPCQFCPKVYDRRTTYYWHMKAAHASSLLRCELCGDAFNGAFGLKAHERRTHTIPSDCVCMRCDLQFYTKEAFDAHRTNDDGHCNLELKSCVRCGATFATTELLIQHELEQQRSGVHFECSLCNKKFHTLDYYKKHHLNSHAATKDSKRNCRPVRDVKICRDKTGSSSLLCEICGKTTKSNGLLKLHHRAKHSTKYLWPHQCNVCPKSFRALALLQDHIRTHTGERPYRCQLCPKAFNCKQNLKRHNIVHTGERPYKCHVCEKKFQTSSCVKVHVKTVHMKIPQPSRTRKKKVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468483;
- 90% Identity
- iTF_00468483;
- 80% Identity
- -