Darc003183.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010000390.1:98844-102985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.2e-05 0.0036 18.1 1.4 3 23 280 300 278 300 0.96 2 11 7e-05 0.006 17.4 1.0 1 23 369 392 369 392 0.97 3 11 0.00024 0.02 15.7 1.2 1 23 396 418 396 418 0.98 4 11 0.013 1.1 10.2 0.3 2 23 440 462 439 462 0.93 5 11 0.16 14 6.8 2.3 1 23 466 489 466 489 0.96 6 11 0.013 1.1 10.2 0.2 2 23 512 534 511 534 0.93 7 11 6.3e-06 0.00054 20.7 2.8 1 23 544 566 544 567 0.96 8 11 0.0063 0.54 11.2 2.0 2 23 583 604 582 604 0.96 9 11 0.0023 0.19 12.6 0.6 1 23 610 632 610 632 0.97 10 11 0.75 64 4.7 2.5 1 20 638 657 638 662 0.91 11 11 0.12 10 7.2 0.0 3 23 708 728 707 728 0.95
Sequence Information
- Coding Sequence
- ATGGATTCGAAAAACTTTGAAACAATTGAAGATCAACCGGAAATTCCAATTAAGGAAGAAATTGAATCCTATCAAGAGAATGTTGAAGTCAAGCATGAAGCAGTAGAAGAAAATGTAGCAGATGACAACCCTTTTAAAAACATCCAATTGGAAGTCAAACAAGAAATAATATCCCTAAGTTTTGAGAAGGAGAGTACAGATTCGCAAAGCGAAGATGAATCACTAGTAAAGTCGGAAAATTTTGAAGACTTAGACATTAAAACTGATACAATAGATTCAGATGTAAAAGTTACGAAATCTGAAGTAAAATGTGAAGATGCAGTGGATGAATCCTTAGTTTCGTATGATTTTCCCGATTTTGAAGACTCTCGGAGTATGGACAGTGATGACTTAGCTGCTCTGAGCCAGGTGGAAGCTTGTTTACATGACGGTGTGAATGTAAAGTCTGAGGGCGATGGGTTTGAGGATCAAAAAGACTTCACTAAAGTCAAAATAAAAGGTGAAGCAGGTCCCCTACTGACCAACACTCACCTTATTACAAACAAATTAATCAAAACCACATCAACGGTCACCCATCCACATGACGGCCTTATACAATCTACAACACAGACATTAGTCATGGAAATTATGGACATGACATCTGGTAATGAACACTTAGCAAAAATGCACAATCCCGAAGAAATTCTACCAACCACAGCCAACTACGAGGATTGCAAAGACGAATATGATGATTTCCAATTGAACTCCATCACTGGTAATGTGCTAACTTTAGAACAGGAAGCTTTTGGTCTGCTAAAAGCCAAGAGAAAACGTACCTTAGGCGACAAAATGTATGGGTGCACAAAGTGTTCTAAAACATACAGAAGAAAGCAGGACCTGACCCGACATCTAGGTGTTCACGATAGCATAGAAAAACGGGCGCTAGGCATAATTAAAGGTAGGAAAACACGTTGTGAAAATCGCAATAAGAAGTTCAAAGAAGAGAGTGAAGAGGAGAAAGTTGAAAAAGAAGGCTACGAGTGTACTTGTGGGAATGTATTTCAAAGGAGAAGCCGACTAGAGACGTGTCTCAGGTCTCATAACTTATGCTCAAACGCAGACCAGTACCCATGCGTTACATGCAAGAAACAGTTTAAGGACAAAGAAGAGTTAGCCATGCATCGAAAGAGGCTCCACCGTAAGAGGTTCCCTTGTAAATTCTGCCCTACGGACTACAACACTCGCAAAGAACTATTCAAACACTTACAAGTGCATCAAAAAGTGCAGTTGATGGAATACAAAGTTATTTCTGAAGTGGTTAAAGGTAAACAGAAGTTAAAGTGTTTTATGTGTGCGAAAACATATTCTGAACTTACCGAACTCAAGAGCCACGTAATGGCAGATCACAAGGAGCCGTACAGGTGTCTCCAGTGTAACTGTACATACCCAAAATTGATAGACTTCGGTAATCACATGAAGGCTTTCCATCCGGAGGTTGCTGGTCAATCTGTCCTGGATGTTCTGCAAGCGTTTTCAATGTTGGTCAAGGCCTGGAAATGTGAGGAGTGCGGCTTGCAATTCCATGAGGCTGACAAACTGGCAATGCACCAGATTGAACAACACAGCCCGGACCTTAGAGCAGAGTCCCAGTTCCAGTGTACGGACTGCCGAAGAGTGTTCGTCAGTCAGAAGGGGCTGACGTCTCACAGACGCATCCATCACAGCACAGAGACTGTGGAGGAAGCAGCTGCCGAGGAGACAGGCGTCATGTGTTTGGAATGTCGCAAAATATGCAAGGACATGACCGCCTTAACATCCCACATGCGGTTCCACTCGCCTGAGCGAAAGTATCCGTGTAAATTCTGTGATTTTCGCTTCGCTACGCCTGAGAAGAGGAAGGCCCACACAGAGATACATACGGGGGATATGAAATTTGTGTGCTTTATTTGTGAATACCAGTGCAGCTCGGAGAACAGATTAAAACAACACAAAGTTTCCATAAAACATCTCAATATGAAAGAGTATTTGTTGACAGGGAAGCCTTTAGTTGAGGAGACTTCGACGTCTAAAGAGAAGGTGAAGAAGAAGAGGAAGAAAGATAGAGAGTTACGGAGTGAGAGCGAGACGGAGAGTGAGGTGGCGTGCGATATATGTGGAGAGAAGTTTGGGAGTGAACCGGTGATGCTGGAACACAAACAAACCCACCCGTTCATTGAGTTCCCCAATGATGATAAGCCTAGCCGAATATTCTTTAAGTGA
- Protein Sequence
- MDSKNFETIEDQPEIPIKEEIESYQENVEVKHEAVEENVADDNPFKNIQLEVKQEIISLSFEKESTDSQSEDESLVKSENFEDLDIKTDTIDSDVKVTKSEVKCEDAVDESLVSYDFPDFEDSRSMDSDDLAALSQVEACLHDGVNVKSEGDGFEDQKDFTKVKIKGEAGPLLTNTHLITNKLIKTTSTVTHPHDGLIQSTTQTLVMEIMDMTSGNEHLAKMHNPEEILPTTANYEDCKDEYDDFQLNSITGNVLTLEQEAFGLLKAKRKRTLGDKMYGCTKCSKTYRRKQDLTRHLGVHDSIEKRALGIIKGRKTRCENRNKKFKEESEEEKVEKEGYECTCGNVFQRRSRLETCLRSHNLCSNADQYPCVTCKKQFKDKEELAMHRKRLHRKRFPCKFCPTDYNTRKELFKHLQVHQKVQLMEYKVISEVVKGKQKLKCFMCAKTYSELTELKSHVMADHKEPYRCLQCNCTYPKLIDFGNHMKAFHPEVAGQSVLDVLQAFSMLVKAWKCEECGLQFHEADKLAMHQIEQHSPDLRAESQFQCTDCRRVFVSQKGLTSHRRIHHSTETVEEAAAEETGVMCLECRKICKDMTALTSHMRFHSPERKYPCKFCDFRFATPEKRKAHTEIHTGDMKFVCFICEYQCSSENRLKQHKVSIKHLNMKEYLLTGKPLVEETSTSKEKVKKKRKKDRELRSESETESEVACDICGEKFGSEPVMLEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468448;
- 90% Identity
- iTF_00468448;
- 80% Identity
- -