Darc018570.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010006040.1:11875-15929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.21 12.5 3.0 2 21 219 238 218 239 0.94 2 11 0.0009 0.077 13.9 0.2 1 23 260 282 260 282 0.98 3 11 0.21 18 6.4 1.7 3 23 321 342 319 342 0.95 4 11 0.045 3.9 8.5 1.5 3 23 350 370 349 370 0.95 5 11 0.12 11 7.2 1.7 2 23 376 398 375 398 0.87 6 11 7.4e-06 0.00063 20.4 0.6 1 23 404 427 404 427 0.95 7 11 0.00011 0.0097 16.7 1.0 2 21 434 453 433 454 0.94 8 11 0.00071 0.06 14.2 0.2 1 23 462 484 462 484 0.94 9 11 0.0022 0.19 12.7 5.6 1 23 490 512 490 512 0.97 10 11 0.002 0.17 12.8 0.9 1 23 518 540 518 540 0.99 11 11 3.1e-06 0.00027 21.6 1.1 1 23 547 570 547 570 0.97
Sequence Information
- Coding Sequence
- ATGTTCATAGTTTTTGTTTTAATAGATAATAGATGTAGGTATGATATTAATTTAGTGTCACTAATCTGGGTTGTATTTTATGCGATGTCGCCGCGAGATACCATACCAAATATACAAGCTTGCCGTATCTGCCTCTGCACTGATTTAACAGACAGTGTCAATTTCGCTCAAGATAATCATTTATTGCAATTGTTCGAGTATTGTGTCGGTCTTAAGGTTACCAGTAATGATTTACCCAAACTTATTTGTAACAACTGCGTTAGAAGCGTGCAGAACTATGCACAATTTAAAGATAAATGTATAAAATCTGACTCACTTTGGAGGTCCATTACAAATGTTGATGCTCAATGCTATTCAGAAACTACTTTAGGCATTGAGAGCCATGATGTCAAGATTGAAGAAATAAGTACTAGTATAGAGATTAACATAGAAAAAGACCAGCTTGAAAAAAATACACATATAGATTTTAAAAGTGCTACTTTTGGTACACAAATCGATACAGATGATTTAAAAGGTGATGAAGAATATGACACCATTCAACTTAGTGCTGAATGTAGCATAGATATTAAGACTGAAAACCAAGAAGATATTAAAGTTGACCAAAGTACTGTTACCAACAATAATGATAGTATTCATGTTGATGATGATGAACTTGTATGTTCAAAATGTAATAAAAAATATGTAAAGAAAGCATGCCTCACAAAGCATTTGAAGTTTTGTCGAATACAAGACAAAAAAGACTTATTTACTTCAAAGAAAAAGTATACATGTGATACATACTACTGTGGTATTTGTGAAGTTGTCTCTTACGATAAGGAAACTTTGAATCGGCACTTGGCAAAACACTACACTGACAACGATTTAGATTGCAGGCTATGTAAATACCGTGCTCACGATCTGGCTGCTATTATGAGGCACAGATATTCACACTATCCGTCAGATATCAGAACCCGTATGGCTTGTCACCTCTGCGATAAAAAGACGCAGTCATCCATGAGTTTAGAGTTTCACTATCGATCTGCCCATTTGGGAATGCCAGGGGGATTGTGCTTACAATGTGATAAAAAGTTCACTGTATTTAAGTCTTGGAAGAACCATAAATTAGGACACAGAACCTGCAATTTGATCTGTGATCACTGTGGGAAAAAGTATTTGTTCAAGCATCAAATCATAGAACATATAAAGGACGCACATTCAAACATAAAGAATTATATTTGCGATGAATGTGGCAAGGGATTTAAGCGAATGTACTCACTGCAGTCACATAAATCGTCGGTGCATTACAAATTAGGTCCATTGAATTGCTCGCATTGCGATAAGTTGTTCAAAACACCCACCACATTGATGGAGCACATGAAGTACGTGGGGACTCCGAATAAATCGTATCGATGCGAAGTTTGCGACAAACTCTTCGCGTCTCCTTATAGGTTGAGGTTGCATTCGATATGGCATTCTGGGGAGAAGCCGCATTGTTGCGATGTTTGCGGGTCACGATACAAAGCAAAAGGCCATCTGAAAATCCATTTGCGTACTCACACCGGCGAACGTCCGTATCAGTGCAAACTATGCATGGAGGCCTACATGACTGTGAAACTGCTGAAAAGACACCAAAGGGTACACACGGGAGATACGAAACCCTTTAAGTGCGAGCTTTGTGAAAAAGGCTTCACAACCAATGGATCTTTATTGAGGCATCGTAAGGTTAGGCATAAAGATATCGATGACGTGAAGGCTGAGGACGTCACTGTACTCAATTAA
- Protein Sequence
- MFIVFVLIDNRCRYDINLVSLIWVVFYAMSPRDTIPNIQACRICLCTDLTDSVNFAQDNHLLQLFEYCVGLKVTSNDLPKLICNNCVRSVQNYAQFKDKCIKSDSLWRSITNVDAQCYSETTLGIESHDVKIEEISTSIEINIEKDQLEKNTHIDFKSATFGTQIDTDDLKGDEEYDTIQLSAECSIDIKTENQEDIKVDQSTVTNNNDSIHVDDDELVCSKCNKKYVKKACLTKHLKFCRIQDKKDLFTSKKKYTCDTYYCGICEVVSYDKETLNRHLAKHYTDNDLDCRLCKYRAHDLAAIMRHRYSHYPSDIRTRMACHLCDKKTQSSMSLEFHYRSAHLGMPGGLCLQCDKKFTVFKSWKNHKLGHRTCNLICDHCGKKYLFKHQIIEHIKDAHSNIKNYICDECGKGFKRMYSLQSHKSSVHYKLGPLNCSHCDKLFKTPTTLMEHMKYVGTPNKSYRCEVCDKLFASPYRLRLHSIWHSGEKPHCCDVCGSRYKAKGHLKIHLRTHTGERPYQCKLCMEAYMTVKLLKRHQRVHTGDTKPFKCELCEKGFTTNGSLLRHRKVRHKDIDDVKAEDVTVLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468418;
- 90% Identity
- iTF_00468418;
- 80% Identity
- -