Basic Information

Insect: Drepana arcuata
Gene Symbol: salm
Assembly: GCA_016069955.1
Location: JACCPG010000209.1:60674-83690[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.15 13 6.9 1.6 1 21 40 60 40 61 0.93

2 8 3.5e-06 0.0003 21.5 0.9 1 23 360 382 360 382 0.98

3 8 7e-06 0.0006 20.5 2.1 1 23 388 410 388 410 0.98

4 8 0.0015 0.13 13.2 1.9 2 23 667 688 666 688 0.97

5 8 0.021 1.8 9.6 1.6 1 14 694 707 694 708 0.94

6 8 0.56 48 5.1 0.0 10 23 735 748 733 748 0.93

7 8 3.2e-06 0.00027 21.6 1.7 3 23 834 854 832 854 0.96

8 8 3.8e-07 3.2e-05 24.5 0.5 1 23 860 882 860 882 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.15	13	6.9	1.6	1	21	40	60	40	61	0.93
2	8	3.5e-06	0.0003	21.5	0.9	1	23	360	382	360	382	0.98
3	8	7e-06	0.0006	20.5	2.1	1	23	388	410	388	410	0.98
4	8	0.0015	0.13	13.2	1.9	2	23	667	688	666	688	0.97
5	8	0.021	1.8	9.6	1.6	1	14	694	707	694	708	0.94
6	8	0.56	48	5.1	0.0	10	23	735	748	733	748	0.93
7	8	3.2e-06	0.00027	21.6	1.7	3	23	834	854	832	854	0.96
8	8	3.8e-07	3.2e-05	24.5	0.5	1	23	860	882	860	882	0.98

Sequence Information

Coding Sequence: ATGCCGCGCGTCAAGCCAGCTTGCGTCCGTCGCGTCTCCATCGGCGAAAGTTCCGGATCCTGTTCGGATGAAGATATTAGCAATGTCCCTGATGAAACGCGAGACCGGCCTGAAGCACATATGTGCCCACGTTGTCAGGAACAATTCGAAAATCTCCATGAGTTCCTGTACCACAAGCGAGTATGTGATGAGAAAGCATTGCAAATGGGAGAGGAAAGGATGCACTCCGATCCTGAAGAAATGGTCGTCTCAGGCGACGAGGAAATGGATGGACCTAACAAGCGACTAGAACAAGTTCGGCGGCACCGGCAAGATGCCGAAAATAACAATAGCCTCGAAGATGGGGAAGCAGAAGTGCCTGAAGCGGATGTTCCACCAGTTGGGCTTCCCTTTCCAGTGGCAGGACATGTTACATTAGAAGCATTGCAAAACACAAAAGTTGCCGTCGCACAGTTTGCTGCAACCGCAATGGCTAACAACGCTGACAATGAAGCCGCCCTACACGAACTTGCTGTACTACAAAGTACACTTTTTACATTGCAACATCAACAAGTTTTTCAACTTCAACTTATCCGGCAACTTCAAAATCAGCTCTCACTAACACGACGGAAAGATGATACCGAAAGCCCGCCGCCAAGAGAACCAGAGCCAATCGTAGCGGTGCCACCCGCTCGATCACCGTCACCGCCTCGTCCGCCACGGGAGCCAACTCCTGTTCCACCCACTCCTCCAACCAGCCAAAGCTTGCCGTCAACCCATTCACATCTTAACCTTAAAACGGAACCGATCTCAGTTCCTAAATTACCAACCTCCTCTCCACCTATGATGTCACATCCACCTTACAGCTCTATATCGTCATCTTTAGCTTCTTCCATTATTACAAACAACGATCCACCGCCGTCCCTTAATGAACCCAATACGCTCGAAATGTTGCAAAAACGAGCACAAGAAGTATTAGATAACGCATCGCAAGGCTTACTTGCCAACAATCTAGCTGATGAGCTTGCGTTTCGTAAATCTGGAAAGATGTCTCCTTATGATGGAAAGTCTGGAGGACGAAATGAGCCATTCTTCAAGCATCGCTGTCGATACTGCGGGAAAGTTTTTGGAAGCGATTCTGCGCTGCAAATTCACATTCGTTCGCATACTGGTGAAAGGCCCTTCAAATGTAATGTATGCGGATCTCGATTTACAACCAAAGGAAATCTGAAAGTACATTTCCAAAGACATACATCCAAATTTCCGCATGTCAAGATGAACCCGAATCCAATACCAGAACATTTGGACAAATATCATCCACCACTATTGGCGCAGCTGTCCCCGGGACCGATCCCCGGAATGCCACCCCACCCATTACAATTCCCTCCAGGTGGCCCAACTCCTTTTCCGCCAAACTTGCCATTGTACAGACCATCGCACCACGATCTACTACCACCACGTCCACTAGGAGACAAACCTCTTCCTCCTCATCCGCTCTTCGCGATGCGAGAAGAACAAGATGTTCCAGCTGATCTCAGTAAACCCTCGGCGCCAAGTCCTTTGCGATCGGCGCCTGAAGTTTTTAAGTCTGAACCCCAAGACGAAGAAAGTCAAAGGGATTCCAGTTTCGAAGATAACGACCGTGTGTCGCCCAAACGAGAACCTGAAGAAAATGACACTGCACATGATGCAGAACAAGAAAGATATCCTTCCACATCACCATATGACGACTGCAGCATGGATTCAAAATATAGCAATGAAGAACAAATCGGCAGAGAAAGTCCGCATGTCAAGCCTGATCCAGACCAACCGGAAAATCTCTCAAGTTCGGAGAGCGGGCGGAGTGCGAGGGCCTCACCACCATCCCCAACGATGTCGACGCTGTCGACACCGCCGAGGCTGCCACCGCACTCGCCGCTGCCATCACCACCTACACCTCTTGCCGCCCTCGGTGCTCTCGGAGGATCGCCCTTCAGCCCACTCGGACTAGCGTTCCCTCCCGCAGTGCGCGGCAACACAACATGCAACATCTGCTACAAGACGTTCGCCTGTAACTCCGCCCTGGAGATACACTACCGCAGCCATACCAAAGAACGGCCCTTTAAGTGCACCGTCTGCGATCGGGGCTTCTCTACAAAGAGCAGTGGCGGCGGTTGCCGGTGCGGTAGGCGCGCGCGCGCACCCCGCCCCCCGCACGCCACTGCTTTGGACCTATGGAACGCCTTCGTCTATCCGGGCAATATGAAGCAACACATGCTTACGCATAAGATTCGCGACATGCCGCCCGGGTTCGATAAAGGGTCGAACGGGCCGCAGCAGACGTCAAGCGAAGATGGCCGTGAGCCAAGTCCCGACCGGCGCTCATCGCCAGACAAGCTGGACCTTAAGAGATCGCCGCCCGCGCACCCACAGCCGCCCATGAACCACCCTCCACCTATGGATATGCCACCGCTGCCAAAGCGACCCAGCGTACCATCGGCACCCAGCCATCAACCACCTCCAATTTCCTCCAAACACCTGTGCGGAGTCTGCCGCAAGAACTTCTCGTCGTCTTCTGCGCTGCAGATCCATATGCGCACACACACTGGGGACAAACCCTTCAGATGTGCTGTTTGCCAAAAAGCTTTCACCACCAAAGGAAACCTTAAGGTGCACATGGGCACGCATATGTGGAGCGGTGGCGCGTCGCGGCGCGGCCGGCGTATGTCGCTGGAGCTGCCGCCGCGGCCGCTGCACGAGCCGCACGACCTGCTGCGCAGACCCGACCTATTTTACCCGTACTTGCCCGCGCCCTTCCTCAACGGCATGCAGCAAAAGCTGAATGAAATATCAGTGATACAGCAGAGCGCGGGTCAGAACGGCGTTGCCGCGAAGTTCCCGGGACTGCTCGGTTTCGGCGCATTCGGTGGTCGAGCGGGCGCGGCGTCGCCCCTGGAGAGACCGCCGTCGCTAGAGGGCGGAGACGAGCGCCAGGCGGCCATGCGTGAGCTAGCTGAGCGCGGCCGTGAGCTGGCGGAGCGCAGCCGGCACATGCGTGAGGAGGCCGAGTACCGCGCAGGCGCTGCGCACGCGCCGCATGCGCCCCCGGCTGCACAGGCCTCGCCACCTGCGCCGCTACACCCGCACCCACACCCACTCGCCTCCTTACCGCCGCCGGCGCGAACCGAGGGACTCACAGTTTAA
Protein Sequence: MPRVKPACVRRVSIGESSGSCSDEDISNVPDETRDRPEAHMCPRCQEQFENLHEFLYHKRVCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATAMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDTESPPPREPEPIVAVPPARSPSPPRPPREPTPVPPTPPTSQSLPSTHSHLNLKTEPISVPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPHVKMNPNPIPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGGPTPFPPNLPLYRPSHHDLLPPRPLGDKPLPPHPLFAMREEQDVPADLSKPSAPSPLRSAPEVFKSEPQDEESQRDSSFEDNDRVSPKREPEENDTAHDAEQERYPSTSPYDDCSMDSKYSNEEQIGRESPHVKPDPDQPENLSSSESGRSARASPPSPTMSTLSTPPRLPPHSPLPSPPTPLAALGALGGSPFSPLGLAFPPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCGRRARAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDMPPGFDKGSNGPQQTSSEDGREPSPDRRSSPDKLDLKRSPPAHPQPPMNHPPPMDMPPLPKRPSVPSAPSHQPPPISSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAAKFPGLLGFGAFGGRAGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRHMREEAEYRAGAAHAPHAPPAAQASPPAPLHPHPHPLASLPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01312492;
90% Identity: iTF_00001461;
80% Identity: -