Darc022848.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010000483.1:32420-43548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00059 0.05 14.5 1.6 1 23 280 302 280 302 0.98 2 12 0.00092 0.079 13.9 3.8 2 23 310 331 309 331 0.95 3 12 2.3 2e+02 3.2 0.9 1 23 335 357 335 357 0.91 4 12 0.00017 0.015 16.2 1.1 1 23 362 385 362 385 0.98 5 12 0.0056 0.48 11.4 0.1 1 23 389 412 389 412 0.90 6 12 0.016 1.3 10.0 0.2 2 21 426 445 426 450 0.91 7 12 0.022 1.9 9.5 0.6 3 23 459 480 459 480 0.97 8 12 0.15 13 6.9 0.4 3 23 501 522 500 522 0.96 9 12 1.6e-06 0.00014 22.5 0.8 1 23 533 555 533 555 0.99 10 12 2.5e-05 0.0022 18.8 0.5 1 23 561 583 561 583 0.99 11 12 1.9 1.7e+02 3.4 5.4 1 21 589 609 589 611 0.91 12 12 3.7e-05 0.0032 18.2 0.2 1 23 617 640 617 640 0.98
Sequence Information
- Coding Sequence
- ATGGAATGTGTGAAAGCGTGTCGTATATGCCTTATTATGGGTGTAAAAATGATAGATCTTAAATTGAGTGCGCTTGTGGAGGTGAATTTACAGACATTAACTGGTACGGATCCATTAATCATGAGTGAACTGCCGAGATATGTCTGCTACGAGTGTGGGGCACTGCTCACAAAATATGGAGCCTTCAAGGAGAAGTGCATGAGAGGGCAGAATGCACTCAATAACATACTGATCATTAACGGAAAGATCACAGCACAATACATCCAGGACATAGACCGGAAGTTTTTGAACCTCACATCAAGCCTGTCACAGCGAACGGTACTTGAACATGAGATCTACGTTCCATTGTGGTCTACAGGAGCAGAAATTGAGACCACTGTAAAAGTTGAATCTGATATTGAGGATGACACAAAATTCAATATTGGATTGGGCTCTGTGAAGCAAGAAGACAGTGATGGTGTGTACCCATCACTGGGAGAGAGCAGTGATGATGAGCCTCTGTGCTACCATAAAAAGAAAAAGAAGGTAGAGAGAGAGGAACACGAAGATAATGATGCAAAGAAGAGTGTTGAAGAGTCTCAGCAGTGGTCTGAAGACGCTTCAATAGAAACAATAGCAGTATCAGACATGGCAGAGAAAGCGAAGAAAAAGCGTGGTCGGCCAAAGAACAAACAGCAGTGCAAGGAACCTAAGACGCCCAGGATCAGTAGGAGCACAGGAGATGCCACCAACAACATGATTCTGGAAGAATACGTCACAGTTATCAAACTGACAGAAGAGCAGCAAAGGGAAGAGATAACTAAGCGCAAGGAGTCGTCCAACTATCAAAACGCGCCGTTCCAGTGCGACCTTTGTTTTAAAGGGTTCATCGACAGCAAAGCGTGGAACCATCATGTCCAGAAGCATAAAGCGAGCCCAGGAGACATGGAGTGCTTCGTCTGTAAGTTCAGGTTTAAAACGAAAAGGCATCTGCAGAAACACGCCGCCAGCCACGAGAAGAAATACGCTTGCAAATTCTGCTCCTATATATCTAAAACGACAACTCAGGCGAATCAACACTACGGTTGGCATAAAGGTGTCACTTACAAGTGTCAGTACTGTGACGAAGTTTCCACCAAATGGACCTCGTATCTCAGCCACCTGAGGATAAAGCATCCGTCGCAGTTCATCTGCGGGGTGTGTGGATACTCCTTCGTGAGCAAGCTGGGCTTGGTCATGCACAACACCATGATGCACAAGGATATAGACCAAACTGCGGCGAACGAGGGCGGTCCCTACTGCGAGGTGTGCGACGTGAAGTTCTTCTCCGAGGAGGCCTGGAAGCGGCACATGGTCACCTCGGTCAAACACGCGCCTGCAGATGTCAGCAAGGGTTGCCGCGTGTGCGGCTCGTCGTTCGCGTCGCGCGAGGAGGCCCGCGCCCACCACAGGCAGGCCCACGCCCGCGCTAGGCCCCGCAACTACGGCAAGCGGCCGCCGCTGCGGGCCTGGCCCGCGCCCTGCGACCACTGTTCGGAGCAGATAAGCAGCGCGCGCGAGTACTGGGTGCACTTCCGCCGCGCGCACCCCGATAAGAAGTATCCCATACAGAAGAACTACGTGTGCGACATATGTGGGAAGAGTTTCCGGGGCAACGCGTTCCTGACGTACCACAAGCGCACGCACTCGGAGGAGCGGCAGTACCAGTGCGCGGCGTGCCCCAAGGCCTTCCACAACCGCGCCAACCTGCAGCTGCACGCGCGCACGCACTCCGACACCAGGCCGCATGCCTGCGCCGTCTGCTGCAAGGCCTTCAAGACCAAGGGCGCGCTCGACAGGCACTTCCGGTGCCACACGGGCGTGAAGCCGTACGAGTGCGAGGTGTGCGGCAAGGCGTTCGGGCAGTCCAACAGCCGCAAGCTGCACGTGCGCACGGTGCACCTCAAGCTGCCCGCGCCCTACGTGTCGCGCGCGCGCCTCGAGCGCCGCAAGCCGCCCAAGGACTGCCCGCCCGCCGCCTACGGCACATAG
- Protein Sequence
- MECVKACRICLIMGVKMIDLKLSALVEVNLQTLTGTDPLIMSELPRYVCYECGALLTKYGAFKEKCMRGQNALNNILIINGKITAQYIQDIDRKFLNLTSSLSQRTVLEHEIYVPLWSTGAEIETTVKVESDIEDDTKFNIGLGSVKQEDSDGVYPSLGESSDDEPLCYHKKKKKVEREEHEDNDAKKSVEESQQWSEDASIETIAVSDMAEKAKKKRGRPKNKQQCKEPKTPRISRSTGDATNNMILEEYVTVIKLTEEQQREEITKRKESSNYQNAPFQCDLCFKGFIDSKAWNHHVQKHKASPGDMECFVCKFRFKTKRHLQKHAASHEKKYACKFCSYISKTTTQANQHYGWHKGVTYKCQYCDEVSTKWTSYLSHLRIKHPSQFICGVCGYSFVSKLGLVMHNTMMHKDIDQTAANEGGPYCEVCDVKFFSEEAWKRHMVTSVKHAPADVSKGCRVCGSSFASREEARAHHRQAHARARPRNYGKRPPLRAWPAPCDHCSEQISSAREYWVHFRRAHPDKKYPIQKNYVCDICGKSFRGNAFLTYHKRTHSEERQYQCAACPKAFHNRANLQLHARTHSDTRPHACAVCCKAFKTKGALDRHFRCHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKLPAPYVSRARLERRKPPKDCPPAAYGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468411;
- 90% Identity
- iTF_00468411;
- 80% Identity
- -