Darc009827.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010008936.1:7715-11786[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0084 0.71 10.8 0.4 1 23 264 287 264 287 0.96 2 18 3.8e-06 0.00032 21.4 2.4 1 23 292 314 292 314 0.99 3 18 1.7 1.4e+02 3.6 0.1 2 23 318 339 318 339 0.87 4 18 0.0012 0.1 13.5 1.5 1 23 344 367 344 367 0.96 5 18 2.5 2.1e+02 3.1 1.8 2 23 377 398 376 398 0.95 6 18 0.00055 0.047 14.6 0.4 2 23 428 450 427 450 0.96 7 18 6.5e-05 0.0056 17.5 2.2 1 23 456 479 456 479 0.95 8 18 0.082 7 7.7 0.3 2 20 484 502 483 504 0.91 9 18 0.025 2.1 9.3 0.2 3 23 514 535 512 535 0.94 10 18 0.099 8.5 7.5 0.6 1 23 540 563 540 563 0.94 11 18 0.068 5.9 8.0 0.1 2 23 576 597 575 597 0.95 12 18 0.0014 0.12 13.3 1.9 1 23 603 625 603 625 0.98 13 18 1.3e-05 0.0011 19.7 1.8 2 23 662 683 661 683 0.96 14 18 1.3 1.1e+02 3.9 0.1 3 23 689 709 688 709 0.84 15 18 0.0041 0.35 11.8 0.8 3 23 726 747 724 747 0.96 16 18 0.00092 0.079 13.9 2.8 1 23 753 775 753 775 0.98 17 18 0.0012 0.1 13.5 5.8 2 23 782 803 781 803 0.96 18 18 0.00057 0.049 14.5 1.4 1 23 809 832 809 832 0.96
Sequence Information
- Coding Sequence
- ATGGACCAAAATGATTCTTCCGAGGAGCAAGATGAAGTATACGCAATTCATGTCACAAATGAGGCCAATAACAGAGAATGGCTGAAACAAAAACTACAGAAAATGTGTCAGGCACAAAAGTTCTGTGGCATATGTTTGAGTGATTCGGGGACCCTGTGCTCAAATGAGGTGGAATTCCTGTTTGGACGTCAAACTTCTTGGAAATCCCTCCATGATATGCTTAGTTATGTTTTTAATGAAGATATCGACAACTTAATATCTAGCTCATGCATATGTGAACAATGCGCAGAGAAAACAATCCAATCATATCTATTCATTCGCAATACGAAACAGATGTCAAACATTGTTAACAGCTGTGCCAACGACATCCTATCCAAAGTGAATGATGTTTCCGACCAGTTGGAGCACTGCAGTAAATATGAGAATGCCAATCTTATGCTTATCCTTGAGAATGATATGGACATGCTTATTGATGAGGTCACTACTTCAATCACAGAGGTTGTACAAAGAGGCTCTGATCGAACTGAACAACCAATTGAAATACCCAAAAGCCTTTTAACGTACATCAATCAACAAGAGAAAAATGTTAACAAATGTGAAAAGCCTGCTCCAAAGAGAGTGGAAGTAGACCAAGGACCCAGACCTCTGGAGATAGTGAAGCAAGAACCGCTGAGAGAAAGGAACGTTGTCAAGTCTGGTGGGACGCCCAATATTACTCTGAAGGAAGGTAAACTAGTGGTCAAACCTTTAGCGTCATCCAGAACCGGCCTGCCACCAATTTTTAACACATACAAATGTACGGAATGCCCTGCAATCTTTGCAAGCTATAGAGTACTGAAGGAACATGAAAAAAATAAACACAAATCCTTAGTCTACCAGTGCAAGCTTTGCCCTAAATCTTACAACACCCAGCAGTACTTAAATGTACATTACAAAACCCATGCCAAAGCGAGATGCAAGATATGCCGTGTCATTCTACCAGAAGGTGATTTGATCAACCACTTGAGAACTGTACACGAGAACATTGTCCACCCATGCAAGTTTTGTGATCTTGTATACTATAGTCCTGAATCATTGGAAACCCATTTCAAAACAACTCATCTGATTAACGATGCTAGATCACAATCACAGTGTGTCATGTGCCTTAGAGGTTTTAGAGAGGAAGAAATGAAGGCGCATAGATGTAAGTTCCACTGCCCGGATTGTACTGTCATGCCATGCATACATCACAGATATCTCATGTCTTATAGACAGCAAATTTTAAACCATGATTCGAAGGTGAAATGCGTGGATTGCGATTATACTACTAGACGAAAGGAATACTTGATTACTCACGCCAATAGAGAGCATTTAAGCCATCATCCATTTACTTGTAATGACTGCGGCCAACAATTCTACACGAAAATGACCCTTAGAACCCATATAACCCAATTCCATCAAGACTTATGTATTTGCGAGTACTGTGACAACGTTTTAAAAGACAAGAACATGTTGGAGGCTCATTCTAAAGCCTGCAAGTTGGTTATAAGGCCATTTGGCTGTGAGAAGTGTGTGGCTTCATTTGATACATCTGATGAGTATGAACAACACTTATTACTGCGTCATAGCGAGGGTATATATCCATGCAAACTTTGCAACAGAGAATTCCTCACGCCTCTGTCATTATCTGAACATCATGCACGGGTGCACAGTGGAATTGAGTACAAAAAGAGACGGAAGTTCATTGAATGCACATTGTGCGATGTTAATTTTAAGAATATCAAAGAAATGATGGAGCATGAGGCTAAACACGGACCGGGGACCACTTACCCTTGTAAAGAGTGCTCCAAACAATATTCAGACTTAAGGAAGCTGTACATCCACAAACAAAGGCATTATACCCAAAGGAAACGCTGTGAAGTCTGCAATAGGATTGTCTCTGCTACATTCTATCCCCAGCATGCAATTAGATGCGCTTATAAAAAAAATAGCAATGTGCAATGTAAGTGTGATACATGTGATAAAAGCTTCAACTCTGAAGCTCTGCTTAAAATACATCTGAAAATCCACTTGAAACCTGAACCATGCAAGGAGTGTGGGAAGCTCGTCAAGCCAGCTTATGTGAAGAAGCATTTGGAGCAAGCACATGGTTCTGCTAGCCAGCCAAGTGGAGCTATCTCCGCAAAAGCTATAGCATGCCATCTCTGCGGGCACTCAGTAAGGAAAATAATAGATTTGGAAGCCCACATGAATAGATACCATCTGAAAATCAAGCCTTACGTTTGTCATGTATGCAGCAAAGACTTCTGCGGCAAAGCAAGGTTAAAGGAGCATCTAGCAACACATACAGATGAGAATGCTTGTTATTGTTCTGTCTGTGGTAGGAAATTCGCCAATAAAGTCTGTCTGAAAATGCATTTTAGAATGCACACCGGCGAGAATCCTTACACTTGTGATATTTGTGGTGAGAAGTTCCGATCGTCTAGTATTATGAAAACGCATCGCCTTAAAAAGCATTTTGAGAAAACTGTCAGCTGTCCTTTATGCGATAGCATGTTCTATATTGTTAGAGATATGAGGTTCCACTTCAAGAAAGTTCACTGGTACAAGTATAAAGATAAGCCTTTCAACCCGAGAGAGGTGAAGGAGTTGGATGAGAAATATTATCATTTGTTTGAAGACGGGAGGATGCCAAAGCTGGATGCAGAATAG
- Protein Sequence
- MDQNDSSEEQDEVYAIHVTNEANNREWLKQKLQKMCQAQKFCGICLSDSGTLCSNEVEFLFGRQTSWKSLHDMLSYVFNEDIDNLISSSCICEQCAEKTIQSYLFIRNTKQMSNIVNSCANDILSKVNDVSDQLEHCSKYENANLMLILENDMDMLIDEVTTSITEVVQRGSDRTEQPIEIPKSLLTYINQQEKNVNKCEKPAPKRVEVDQGPRPLEIVKQEPLRERNVVKSGGTPNITLKEGKLVVKPLASSRTGLPPIFNTYKCTECPAIFASYRVLKEHEKNKHKSLVYQCKLCPKSYNTQQYLNVHYKTHAKARCKICRVILPEGDLINHLRTVHENIVHPCKFCDLVYYSPESLETHFKTTHLINDARSQSQCVMCLRGFREEEMKAHRCKFHCPDCTVMPCIHHRYLMSYRQQILNHDSKVKCVDCDYTTRRKEYLITHANREHLSHHPFTCNDCGQQFYTKMTLRTHITQFHQDLCICEYCDNVLKDKNMLEAHSKACKLVIRPFGCEKCVASFDTSDEYEQHLLLRHSEGIYPCKLCNREFLTPLSLSEHHARVHSGIEYKKRRKFIECTLCDVNFKNIKEMMEHEAKHGPGTTYPCKECSKQYSDLRKLYIHKQRHYTQRKRCEVCNRIVSATFYPQHAIRCAYKKNSNVQCKCDTCDKSFNSEALLKIHLKIHLKPEPCKECGKLVKPAYVKKHLEQAHGSASQPSGAISAKAIACHLCGHSVRKIIDLEAHMNRYHLKIKPYVCHVCSKDFCGKARLKEHLATHTDENACYCSVCGRKFANKVCLKMHFRMHTGENPYTCDICGEKFRSSSIMKTHRLKKHFEKTVSCPLCDSMFYIVRDMRFHFKKVHWYKYKDKPFNPREVKELDEKYYHLFEDGRMPKLDAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468381;
- 90% Identity
- iTF_00468381;
- 80% Identity
- -