Darc009077.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010000009.1:82791-89851[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 1 10.3 1.0 1 23 31 54 31 54 0.93 2 19 0.16 14 6.8 0.6 2 23 80 102 79 102 0.93 3 19 0.0027 0.23 12.4 2.5 2 22 126 146 125 149 0.89 4 19 0.07 5.9 7.9 0.0 1 23 154 177 154 177 0.90 5 19 0.0037 0.32 11.9 0.9 2 23 183 205 183 205 0.95 6 19 5.3e-05 0.0045 17.8 0.1 2 23 208 230 207 230 0.95 7 19 0.014 1.2 10.2 6.0 1 23 237 260 237 260 0.93 8 19 0.0024 0.21 12.5 0.4 2 23 267 288 267 288 0.96 9 19 3e-07 2.6e-05 24.8 1.0 1 23 294 316 294 316 0.99 10 19 5.6 4.8e+02 1.9 1.9 1 23 543 565 543 565 0.95 11 19 0.073 6.3 7.9 2.2 2 23 591 613 590 613 0.92 12 19 0.00037 0.032 15.1 3.5 2 23 636 658 635 658 0.93 13 19 0.0013 0.11 13.4 1.8 1 23 664 687 664 687 0.95 14 19 0.002 0.17 12.8 4.5 2 23 693 715 693 715 0.91 15 19 0.0011 0.094 13.6 2.8 1 23 717 740 717 740 0.97 16 19 0.015 1.3 10.0 3.9 1 23 747 770 747 770 0.94 17 19 0.0025 0.21 12.5 0.2 2 23 777 798 776 798 0.96 18 19 3e-05 0.0026 18.5 2.9 1 23 804 826 804 826 0.99 19 19 9.4e-06 0.0008 20.1 1.9 1 23 832 854 832 855 0.96
Sequence Information
- Coding Sequence
- ATGGGAAAACAGAAGGGCCATTTGCTCGAACTTGTAACTGTAATTTTAAAGAATTCCAACGTAATGCCCTTCAAGTGGTTTTCCAACAACTTTGTGTGTTTGTTTTGCGGCTCTGAGTTCCGTCTGAGTTCCAAACTCAAAACACATTATAGTGAGGAACACACAGGCGCTATAGCCAAGAATGTTTTGAGACACGAAGTCAGCAGACGAAGAATCAAGGTCGATATATCGGACTTAACTTGCAAGATATGCTATAAGCAAATAAAAACCTTGGAAGATTTTCTCACGCACGCCTCGAAGTTACACAACTTGGAGTTTAACAGAGCAGCAGCAAAAGACATATACGCATTTGCACTTACTGACGATAATCTCTCGCCGTGCACTGTATGCGGAAAGCAGTTTAAATTCTTTGGATCTCTATTGAAGCACATTTACAAATGTCAGCACAAAACAATTCCGTACTTGTGCGAAATTTGCGCCCAAGGGTTCGCTGAAAGGGGTGCTCTGGAGAAACACAAGAGTGCGATCCATTTGACAGACCAAGGGCGTTGCTATAAATGTAGAAAGATATTTCCAGACACTGCAACATTAAAGATGCATTTAAAACAAGCTCATAAGATTAAATGCCCGAAATGTCCTGAGGTTTTCACCACTCAGTATCAGAAGAGAGCGCATCTTATAGTCGCTCATGATGACAAAGAACTCCAATTCAGCTGCGATCTATGTTCGCGTTGCTTCAATACTAAAAATAAATTAGTTCACCACAAATCGAATATTCATTTCAAGGAGCGCAATGAAACATGTGAAATTTGCGGCTTTAAAGTTTATAACAGGCGAGCGTTAAAACTACATATGGTTCGGCATAACAATTCCCGTCCTTTTCAGTGTGAAATCTGTGAGAAAACTTTCCCTAGAAAGTATTCCTTGGAAATGCACAGAAGGATTCATCTCAACGACAAACGTCGCAGACCGCATCAAGAATGGGTATCTAAACAACTAGCCTGTCCACCGACAGATGTGTTTGAGAGTGTCGATGTTTGCTGGCAGTTCCTTAAGTCCAGCATGTTATGCGCCGCGAAAGAGGACAATGCAAAACTTTTTAGGAGGGAAGTTAAGAAGTCCAGAAGTTGTGTCACAGCTAGTAGCAGGATGAATGTGATCCTTTCTAAGGACAATGACATAATGACAGACAAAACATACGTCCTCAGGCGATGGAGTGAATTTTACAAAGATATGTATGATGATGATGCGGCTGATCTACTCATAGATCTGCCTCCAACAGAATCTAGCGAGGATCCTTTAGCGGATAAAATAAAATGCAAGGGCGATCCGATAGGTTTCTCTGGGAATCCCAAGGTGGATTTAGACCAAGAAGAGGATATATGGATCAAACCTTCTCGAATCGCCGAAAAGTTTTTGGATAATAACCAAAAGTTTTTCTGCACTTTCGTCGACTTAGAGAAGGCATTTGATAGTCAATCGCAAGGCGACCTGCATGACAATTCAGATATGCCCAGAGTATTGACTGCGAAGGAGTTGAGAAAACACCAAGCCGACCTTACAATACTCGTCCGAATAATTCTGGAGAACTCGGCGGCTGTCCCGTTCAAATGGTGGCCTGGTACGTTCGCGTGTTTCTACTGCGCCTGCCCATTCCAACAGATCTCCATACTCAAGACACACACCAAAGAACACACGACCGGCGAGCTGAACAGTGCTTTAAAACTCGAAGTCAGCAGAGGTAGAATAAAATTCGATATATCCGAACTCGTCTGTCGCAAATGTTCCAAACAATTTTGCACAATGGACGAATTCTTGACTCACGCAACCGTCTCGCACGATTTGAAGTTCGACAGGGAAGCGACCAAACACATTTTTACATTCAAGTTAGCTGACAATGATTTGTCCTGCCATCAATGCGGGAAATCATTCAAATTCTTTGACACCCTACTGAAACACGTGTACAGATACCACAGCAAGAGCAGTCCGTATTTGTGTGAAATTTGCGGCCACCGTTTCGCCACGAGGTCTCACGTGGACGGACACATAAAGTCACAACATTTGGGCAAGCAGGAGAAGTGTCCGAATTGCAAAAAGGCATTTTCGGACGCGGCGTCTTTGACCGCTCATTGCAAGAAATGTCACGGCCATAAGTGTCCGAAATGCTCCGAAGTTTTCACAACTAAATATAGGAGAAGGACCCACTTGGCCACAGCTCACGACATGAAACAGTACCAATTCGACTGTGACCAGTGCTCACACCAGTTCACGACCAAAAGCAAGTTGTTGTACCACAAATCCAGCGTGCACTTTAAAGAGAAGAACCTGTCTTGTTCTATCTGCGGGATTCAGGTTTACGACAAACGGACGTTGAAGCTGCACATGGTACGACACGACGACGCCCGTCCGTTCCAGTGCGATATTTGCAAGAAGACGTTTCAGAGGAAGAAAACCATGGAGTTGCATCGAAGGATTCATACAAATGACAGAAGATATGTTTGTAAAGAATGCGGGAAGGCGTATGTTCAGTATACGAGCTTAAAGTTACATAGGAAAGTGCACCATGCCAATAACGAACAGGCGTGGATGTGA
- Protein Sequence
- MGKQKGHLLELVTVILKNSNVMPFKWFSNNFVCLFCGSEFRLSSKLKTHYSEEHTGAIAKNVLRHEVSRRRIKVDISDLTCKICYKQIKTLEDFLTHASKLHNLEFNRAAAKDIYAFALTDDNLSPCTVCGKQFKFFGSLLKHIYKCQHKTIPYLCEICAQGFAERGALEKHKSAIHLTDQGRCYKCRKIFPDTATLKMHLKQAHKIKCPKCPEVFTTQYQKRAHLIVAHDDKELQFSCDLCSRCFNTKNKLVHHKSNIHFKERNETCEICGFKVYNRRALKLHMVRHNNSRPFQCEICEKTFPRKYSLEMHRRIHLNDKRRRPHQEWVSKQLACPPTDVFESVDVCWQFLKSSMLCAAKEDNAKLFRREVKKSRSCVTASSRMNVILSKDNDIMTDKTYVLRRWSEFYKDMYDDDAADLLIDLPPTESSEDPLADKIKCKGDPIGFSGNPKVDLDQEEDIWIKPSRIAEKFLDNNQKFFCTFVDLEKAFDSQSQGDLHDNSDMPRVLTAKELRKHQADLTILVRIILENSAAVPFKWWPGTFACFYCACPFQQISILKTHTKEHTTGELNSALKLEVSRGRIKFDISELVCRKCSKQFCTMDEFLTHATVSHDLKFDREATKHIFTFKLADNDLSCHQCGKSFKFFDTLLKHVYRYHSKSSPYLCEICGHRFATRSHVDGHIKSQHLGKQEKCPNCKKAFSDAASLTAHCKKCHGHKCPKCSEVFTTKYRRRTHLATAHDMKQYQFDCDQCSHQFTTKSKLLYHKSSVHFKEKNLSCSICGIQVYDKRTLKLHMVRHDDARPFQCDICKKTFQRKKTMELHRRIHTNDRRYVCKECGKAYVQYTSLKLHRKVHHANNEQAWM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -