Darc007316.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010008400.1:1-3709[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.2e-06 0.00019 22.1 2.6 1 23 13 36 13 36 0.96 2 19 0.00054 0.046 14.6 0.1 3 23 43 64 41 64 0.96 3 19 1.4e-05 0.0012 19.6 0.1 2 23 73 95 73 95 0.97 4 19 5e-07 4.3e-05 24.1 1.6 3 23 105 126 103 126 0.94 5 19 0.0025 0.21 12.5 0.1 2 23 134 156 133 156 0.93 6 19 0.0014 0.12 13.3 1.0 2 23 165 187 164 187 0.93 7 19 2.4e-06 0.0002 22.0 5.4 1 23 193 216 193 216 0.98 8 19 0.00014 0.012 16.4 0.4 1 23 248 271 248 271 0.96 9 19 0.36 31 5.7 3.2 3 23 299 320 297 320 0.95 10 19 0.065 5.5 8.0 2.8 1 23 356 379 356 379 0.93 11 19 9.8e-05 0.0084 16.9 2.5 1 23 401 424 401 424 0.96 12 19 5.2e-06 0.00044 20.9 1.1 2 23 431 453 430 453 0.96 13 19 4.4e-05 0.0037 18.0 3.8 1 23 459 482 459 482 0.96 14 19 0.00064 0.054 14.4 2.0 1 23 488 511 488 511 0.96 15 19 0.75 64 4.7 6.5 2 23 519 541 519 541 0.95 16 19 0.00056 0.048 14.5 0.2 1 23 548 571 548 571 0.97 17 19 0.17 14 6.8 0.7 1 22 578 599 578 601 0.89 18 19 0.0051 0.44 11.5 2.5 3 23 616 637 615 637 0.91 19 19 8.1 6.9e+02 1.4 0.1 3 15 659 671 658 674 0.86
Sequence Information
- Coding Sequence
- ATGGTATTAGATATCATGTTTCAATCCCAATTGGACTTCATTTGTGACTATTGCAATAGGATTTTCACCAGAAAATATAACTTACAAATCCACATTGAAAGCTGTCACACAATCGCCACAACATTTTGCACAATATGCAATCAAGGCTTTGGAACAGCCAGTGGGCTGGAAGTACACCAATCCCGAGGCCACAACCGGTTCGGACAGCAGTTACCTGAGTGTGATATCTGCGGACGAATCTTTACGAGGAAGCAAAACATTGTGTCTCACATGATAACAGTCCATTTACAAGGCCTAGGTCCTGATATCATTTGTAAATACTGTGATAAGACGTTTTCCTCTGAGAAGAATTTGAAAAGGCATTTAAATCAGCAACATAATCCAAATTTGGAATATGTCACTTGCCTCGATTGCAATAAGATATATAAGGGCAAGGAACTGCTTGCTGCTCACATTGACAACATGCATAATATCTCTGTGCCTGGCTCGACTCAGTGTCATCTTTGTGAGAAAGTGTTTCTCAATGCCCGATACTTAAAACGCCACATAGATCTTGTACACCTTGAGAAAAACAGCCACAAGTGTCACTTGTGTCCCAAATTCTATACTTCCAACAGTGGGTTAAAAAGACACATGAAAACTGTCCATAACATTACAAATAAAGAAGACTACACATTTGAGGTTGTCACCCCGGAAACGCCCGAAGTCAACATATCAAAGGTAAATGCCGAATCAGAATTGTACATATGCCCGAATTGTGACAAGTCATTCCAAAGAGAAGGAGAGCTACGGTTTCACATAAAAGTGTATCATTCTTTTAAAGTATTCTACAAATATTGTCAGCAATACACAAGTCTCCAAAGAGATATTATTGACAAATATTCGTTATCACATTGTGAATACTGCATTTGTGTGTTTGTGAAAGTATTTGAGCTCCAATCTCATATGAAGTCCAGTCATAATATGGAATACATTCCATCTACTTGTAATGTGTGCTTCAATAAGTTTTACAGTATGGAAACAAGGTTGCAACACAGCAAGATATGTCTGCCACCTCTAGATGTTCACAATTGTAATTTTTGTGACAAATTATTTACAGATGTATCAAGTTTAGAGTTTCATACGAAAATTTTCCACCCTCATGCTGTAATTGCTGTCAATAACATCACGTCAACAAATGCTGAGGAACTTGAAAATTCATACAAATGTTCTGAATGCAACAGGTCTTATTACAACGAAAGATCTCTTAAGCAACATGTCAAACTAAAACACAGTACAGATGAGAGCATAGAATGCGTTTATTGTGGCAAAATGTGTTCTAATAGATATTACCTCGCGTCGCACATGAAGACAGTGCATCGCGAGGACAATTGGTATAAATGTGATTACTGCCAGAAGTATTTTAAATCTAAGAGAAATATTCGTAGACATATCGAGTACACACACTTGAACATCCAAAGGTTCAAGTGTATTGAATGTGGGACGCTGTTTAAAGAGAAGAGGAGCCTGAGGAAACATATAAGGTCTAAACATGAAGACTCGGCCTTATTCCCACAGTGTCACATTTGCCACATGAAGTTCGAGTCTGCGAAGTCGTGTAAGGTTCATCTCAAATTGCTCCATTCTTACAACATGGTCGACTATCCCTGTGATCTCTGTTCGGTTACTTTCAACTCTAATGTCGAACTTTCGCAGCATTTAAGCAAGATACATTCCGGTGAGAGTAAACTGTACAAATGCGATGTGTGTAATCTGGTATTGACAGGAATGGAAAACTTCTGCCAACACAATGAATTAGTTCACGACAACCCGTTCCCAGACGTGAAGCAAAAGAATCAACCGAGATGTATAATCTGCATGAAGGATTTTAGTTCGCGCAAATCGTTGAAGCGACACATACGGAAATTCCACGCGGACTTTAATGTCGATGAATTGGCAACATTCGGCACGAAGCAAAGGACTTTTATCGTGGACTGCGACGAGTGCATTAAAAACTTTAGCGATCAGTATTATGTCAACATATATGACAAGTTGAAAAACACAGAGGGGGCGATAATATTTAAATGTGAATTTTGCAAGTGCTCCTACAATGTTATTGAGTTTGCTGTGCAAAGGCACAAGTTGGGGACAGATAGGGCTCAGAGTAAAATGGTTTTGAGTGAGCTGTGTACCACTGAGATGAGCGACGAAGACCCATCATGTTCCGAAATTGGTTCTACAATGGATAGTGAGCCCGTTAGCACTACCACCTTATCTGGTTGA
- Protein Sequence
- MVLDIMFQSQLDFICDYCNRIFTRKYNLQIHIESCHTIATTFCTICNQGFGTASGLEVHQSRGHNRFGQQLPECDICGRIFTRKQNIVSHMITVHLQGLGPDIICKYCDKTFSSEKNLKRHLNQQHNPNLEYVTCLDCNKIYKGKELLAAHIDNMHNISVPGSTQCHLCEKVFLNARYLKRHIDLVHLEKNSHKCHLCPKFYTSNSGLKRHMKTVHNITNKEDYTFEVVTPETPEVNISKVNAESELYICPNCDKSFQREGELRFHIKVYHSFKVFYKYCQQYTSLQRDIIDKYSLSHCEYCICVFVKVFELQSHMKSSHNMEYIPSTCNVCFNKFYSMETRLQHSKICLPPLDVHNCNFCDKLFTDVSSLEFHTKIFHPHAVIAVNNITSTNAEELENSYKCSECNRSYYNERSLKQHVKLKHSTDESIECVYCGKMCSNRYYLASHMKTVHREDNWYKCDYCQKYFKSKRNIRRHIEYTHLNIQRFKCIECGTLFKEKRSLRKHIRSKHEDSALFPQCHICHMKFESAKSCKVHLKLLHSYNMVDYPCDLCSVTFNSNVELSQHLSKIHSGESKLYKCDVCNLVLTGMENFCQHNELVHDNPFPDVKQKNQPRCIICMKDFSSRKSLKRHIRKFHADFNVDELATFGTKQRTFIVDCDECIKNFSDQYYVNIYDKLKNTEGAIIFKCEFCKCSYNVIEFAVQRHKLGTDRAQSKMVLSELCTTEMSDEDPSCSEIGSTMDSEPVSTTTLSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00467573;
- 90% Identity
- iTF_00467573;
- 80% Identity
- iTF_00467573;