Darc008842.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drepana arcuata
Gene Symbol
-
Assembly
GCA_016069955.1
Location
JACCPG010005825.1:101999-119448[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 7.4e-05 0.0063 17.3 0.1 3 23 129 149 128 149 0.97
2 17 6.7e-07 5.8e-05 23.7 1.2 1 23 155 177 155 177 0.99
3 17 4.2e-06 0.00036 21.2 2.7 1 23 183 205 183 205 0.99
4 17 3.8e-05 0.0033 18.2 3.1 1 23 220 242 220 242 0.98
5 17 2.7e-07 2.3e-05 25.0 1.5 1 23 257 279 257 279 0.99
6 17 0.00012 0.01 16.7 2.8 1 23 285 307 285 307 0.98
7 17 0.00019 0.017 16.0 0.0 1 23 314 336 314 336 0.97
8 17 8.4e-06 0.00072 20.3 2.1 1 23 342 364 342 364 0.99
9 17 0.027 2.3 9.2 1.8 1 23 371 393 371 393 0.98
10 17 4.5e-07 3.9e-05 24.3 2.3 1 23 399 421 399 421 0.99
11 17 0.11 9.6 7.3 1.8 1 23 428 450 428 450 0.98
12 17 1.8e-06 0.00016 22.3 1.5 1 23 456 478 456 478 0.99
13 17 0.00049 0.042 14.7 0.7 1 23 485 507 485 507 0.99
14 17 2e-06 0.00017 22.2 1.9 1 23 513 535 513 535 0.98
15 17 0.0015 0.13 13.2 0.3 1 20 541 560 541 563 0.93
16 17 2.9e-05 0.0025 18.6 1.4 2 23 570 591 569 591 0.96
17 17 2.6e-06 0.00023 21.9 1.4 1 23 597 620 597 620 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAAGCTGAACCTATGAGTTTCTACACAAGCCACCCCCACATACACTCTGGTCCCCCGCTGCGATCGGAGTCCGCCCACAGCCTCATGATGAACCAACACCATCCGCACCATGAAGACTCCAAAGACAGCTTAATACAACACCAAGTACAACATCAGCAAGACCTATTGGACCATCAGCATCAACAGCAGGAAATGCATCAACAGGATGATGAGTTGAGCTTCAAAGGAATGGAAGACGAGGGTGTAGAAATGGATATGGACGGCCGACAGTGTTCTCAGGGCATGGGTGTGGATATGGGATCAGTTCAAACCAAGATGGAAGTCGCTAATGGTGGCCAATCAACTCCGCGTTCTAAGCCCCAAGCTTGTAAGGTCTGTGGCAAGGTACTATCCTCAGCTTCATCATATTACGTCCACATGAAGCTTCATTCTGGAAACAAGCCCTTCCAATGTACTGTGTGCGACGCCGCCTTCTGCCGCAAGCCGTACCTGGAGGTACACATGCGCACGCACACGGGCGAGCGGCCCTTCCAATGTGACCTATGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACACACAAACGCGTCCACACTGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGACATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGCCCTTTCGCGTGCGGGCTTTGCCCGGCGGCCTTCGTTCGCCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAAGCGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACTCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTGAACATACACAAGCGGACGCACTCAGTGCAAGGCCGGCCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTATGCCTCAAGAGATTCGCGCAAAAATCTACACTCAATATACACAAAAGAACGCACACAGTGCAAGGGCGGCCGTTCCAATGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAGATACACATGCGCACGCATACCGGCGAACGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACCCAGAAATCTACGCTCAACATACACAAGCGCATTCATACCGGTGAACGCCCATACGCATGCGACATTTGTCAGAAACGATTCGCTGTAAAGAGCTACGTAACTGCGCACAGATGGTCCCACGTGGCGGACAAGCCGCTCAACTGTGACCGCTGCTCGATGACGTTTACGTCCAAGTCCCAGTTCGCGCTGCATATTCGCACGCACTCCGCTGGCTCTTGCTACGAGTGCAGCGTCTGCGGCCGCACCTTCGTACGAGACAGCTATTTAATAAGACACCACAACCGCGTGCACCGCGAGAACCACAGCAACGTATCCGCCAACAGCATCGGCACTCTGAACAGTGTCGCTACCAACACTAACAACTCCAACAGTAACTACGACTCGCCCGGCGTATGTGACTTAAGCTTTGTACCGATGGTGAATCGTTATATGACATCGCAAGGTACACAAGTGTCCATGCAGGACACACAAAGCAAGATGTCTGCTATGTCGCCGCAATCCATCGCGTCTATCTCGTCGCCCCCTCCCCCGCACACCCCCACGCCCCAGCCCCAGATGTCGGGTCAAATGCACCTGACTGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHIHSGPPLRSESAHSLMMNQHHPHHEDSKDSLIQHQVQHQQDLLDHQHQQQEMHQQDDELSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVANGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGLCPAAFVRRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPFQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIGTLNSVATNTNNSNSNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_00468339;
80% Identity
-