Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.7 5.9e+03 -2.2 0.2 17 23 57 63 54 68 0.78

2 8 0.0035 3.1 8.3 0.0 15 44 101 127 92 127 0.90

3 8 0.099 88 3.6 0.4 7 28 138 159 133 166 0.80

4 8 0.0018 1.6 9.2 1.6 6 43 166 200 161 201 0.85

5 8 5.5e-05 0.049 14.1 3.6 10 44 200 229 196 229 0.89

6 8 6.2e-05 0.055 13.9 2.9 13 43 257 284 244 285 0.89

7 8 0.0013 1.1 9.7 3.1 5 24 278 297 278 312 0.86

8 8 0.26 2.3e+02 2.3 2.7 16 43 317 341 307 342 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.7	5.9e+03	-2.2	0.2	17	23	57	63	54	68	0.78
2	8	0.0035	3.1	8.3	0.0	15	44	101	127	92	127	0.90
3	8	0.099	88	3.6	0.4	7	28	138	159	133	166	0.80
4	8	0.0018	1.6	9.2	1.6	6	43	166	200	161	201	0.85
5	8	5.5e-05	0.049	14.1	3.6	10	44	200	229	196	229	0.89
6	8	6.2e-05	0.055	13.9	2.9	13	43	257	284	244	285	0.89
7	8	0.0013	1.1	9.7	3.1	5	24	278	297	278	312	0.86
8	8	0.26	2.3e+02	2.3	2.7	16	43	317	341	307	342	0.79

Coding Sequence: ATGAAACTGGAGAGCAAAAATGGAATGACAGCAGACGTGTCGATGTTATGCCCCCAGCCGGAAGCAAAGAATCTGTCAAACAAGGATAAACTGACGATTATGAGGGATAACGTGACACAAGTGTTGCTTAATTCGACGCTGATGCCATTCAGATGGCTCCGGAGTGCGTACAGATGTTTCTATTGCTACGAAATGTTCCAAGAGCCAAAGGATTTGAAAGCCCATCAAACACAGCACAACGACCAGGACATACCAAGGGTTATGAAAACTTATTGGGAGCCTGTAGTTTACGCAGATGTGTCGAGCATTTCGTGCAAGCTTTGTCCGGAGAGGATAGCAGACCTCAACGAATTAATAGACCATTTGACGAGCCAGCATCCAATGCGGTTCGACCAACGCCTTAAAAATTGTTTCGGCTCGTTCAAACTTAACGATTCGTCAGTTTCTTGTGTACAGTGCGCTAAAACGTTCTCGTCACTCAGTCATTTGCTGATTCACGCCAATAAAGACCATATAGAGGAGAGTCGTGTGCTCTGTGACATTTGCGGCCAGAACTTCCAAAGTGCCAGCCGGCTGCGTCATCACACTAAAAAAGAACACGAGGATAATGCGGTAAAGTGTACCATATGTGGTGAAATGATTGGCAGCGTCAATAAGATGAGAACTCATCTACAGCACGCTCATAATAAGCGATACAAGTGCTTTTTATGCTCAGATTCCTTCGAAACTCATTACAAGCGGTCCCGCCACATGATGGTGTTTCACAAGGAGCGAAAGGAGATCAAGTGCCAGTATTGTTCGAGAACTTTCGTTTATAGAAGCACGATGGTTCGCCATGTTAGGGAAATGCACTTGCAGGAGAAAAATGCAGTTTGTAACATTTGCGGGTGGAAAGCTTTCGGTGGTAACAGGCTTCAATTGCATATGATGAAGCATAGTGACGTGAGGAACTTCAAGTGTACGGTTTGTGACAAAGCGTTTAAGACCAAAAAGACTATGCGCCAGCATTACAATAACATACACCAGAAAGGGATTAAGAAAGGCAGTCAGGTCCAGATTTCAACTTGA
Protein Sequence: MKLESKNGMTADVSMLCPQPEAKNLSNKDKLTIMRDNVTQVLLNSTLMPFRWLRSAYRCFYCYEMFQEPKDLKAHQTQHNDQDIPRVMKTYWEPVVYADVSSISCKLCPERIADLNELIDHLTSQHPMRFDQRLKNCFGSFKLNDSSVSCVQCAKTFSSLSHLLIHANKDHIEESRVLCDICGQNFQSASRLRHHTKKEHEDNAVKCTICGEMIGSVNKMRTHLQHAHNKRYKCFLCSDSFETHYKRSRHMMVFHKERKEIKCQYCSRTFVYRSTMVRHVREMHLQEKNAVCNICGWKAFGGNRLQLHMMKHSDVRNFKCTVCDKAFKTKKTMRQHYNNIHQKGIKKGSQVQIST

Sequence clustering based on sequence similarity using MMseqs2