Darc002460.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010010955.1:30692-38281[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-11 4.5e-08 33.1 0.0 4 39 178 214 175 218 0.88 2 4 1.5e-11 3.2e-08 33.6 0.2 2 39 230 267 229 270 0.93 3 4 1.7e-15 3.6e-12 46.2 0.0 2 45 285 329 284 329 0.96 4 4 4e-17 8.6e-14 51.4 0.1 1 44 336 380 336 381 0.93
Sequence Information
- Coding Sequence
- ATGACCGGCTACGGCCTGTGTCGCGTCAAGAGCGAGCCGCAATCCGAGGAAGAGGATAGCTCCCAGTTCACGAGCTGCTTTGACCTTCAGCTACCCTCCTTCGATCTCCACGCCGTTAAATTAGAACCGCAGTATTCAGAGTGCTCGGCCGAGGGCAATGGATCCGCCGACCTTCTACAACATTTGCAAGGTAGCGGCTTGGAAGAGTTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCGGTCTGCGACAAGCAGGATCCAGCTGATACACCAGCACTCACCCTGGAGACCCTGCAGTCCGCGCCCCACACACATGGCGTATCTACATTGATGGACAGACACGCTACAATGCTGACATCATCAGCGATGCCTGATTGCACTGATTTCATGCCTTTTTTGCCTGTTAAAGATGAACCGGTATCAGATGGAGAGCACCACCCCCTAAGCAGCGACGACGCGAGCGATTCGAGCAGCGCCCACTACGAGCCGCAGGCACGCGGCAGCCCTAAGACCTGGACGCAACAAGACATGGACTGCGCGCTGGAGGCGCTGCGCAAGAGGAACATGAGCCTCACAAAGGCATCGGCGCGGTACGGCATCCCGTCCACGACGCTGTGGCAGCGCGCGCACCGCCTGGGCATCGCCACGCCCAAGCGTGACGGCGCGGCGCGCGCCTGGCGGCCGCAGGACCTGCGCGCGGCGCTGCTGGCCCTGCGCGCCGGCGCGCTGTCGGCCAACAAGGCCAGCAAGGCCTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGGGAGGGCATCCGGCTGGCCGCGCCCTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCCTCCATCCGCTGCGGGGCCTGCTCCGTGCAGCGCGCCGCCTCGCAGTACGGCATCCCCACCGGCACTCTGTACGGCAGGTGTAAGCGCGAGGGCATAGAGCTATCCCGTTCCAACCCCACTCCCTGGTCGGAGGACGCCATGGGGGAAGCACTGGCCGCTGTCAGGGTGGGACACATGTCGATCAACCAAGCTGCGATTCACTACAACTTGCCGTACTCCTCACTATACGGCCGCTTCAAGAGATGCAAGCACCAGGCACAGAATATGGCCCAAGTCCCTCAACAGGAGATACAAAATGGTTCCGAAATGGAGTTCCAGAATCAAGAGATGCCTTACTATGAGACGATGTGTCCCAGCCTGCAGTACCCGGCCGAGCCCGCGTATGAGGCCGGCGAGGCCGCGGGCTGGCCGGCGCGCCCGCAGCTTGCCACCAGCTGA
- Protein Sequence
- MTGYGLCRVKSEPQSEEEDSSQFTSCFDLQLPSFDLHAVKLEPQYSECSAEGNGSADLLQHLQGSGLEELAPLAPAGPAATPVCDKQDPADTPALTLETLQSAPHTHGVSTLMDRHATMLTSSAMPDCTDFMPFLPVKDEPVSDGEHHPLSSDDASDSSSAHYEPQARGSPKTWTQQDMDCALEALRKRNMSLTKASARYGIPSTTLWQRAHRLGIATPKRDGAARAWRPQDLRAALLALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQLALASIRCGACSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALAAVRVGHMSINQAAIHYNLPYSSLYGRFKRCKHQAQNMAQVPQQEIQNGSEMEFQNQEMPYYETMCPSLQYPAEPAYEAGEAAGWPARPQLATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468110;
- 90% Identity
- iTF_00468110;
- 80% Identity
- -