Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:8250951-8251949[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0045 0.42 12.6 4.4 1 23 54 76 54 76 0.99

2 9 0.017 1.5 10.8 0.7 3 23 84 104 82 104 0.97

3 9 1.5 1.3e+02 4.7 1.7 2 23 111 132 110 132 0.95

4 9 6.2e-05 0.0057 18.5 0.5 1 23 138 160 138 160 0.97

5 9 0.0072 0.66 12.0 1.6 1 23 166 188 166 188 0.96

6 9 2.6e-05 0.0024 19.6 1.1 2 23 195 216 194 216 0.97

7 9 0.00017 0.016 17.1 4.0 1 23 222 244 222 244 0.99

8 9 4.5e-05 0.0042 18.9 0.7 1 23 250 272 250 272 0.99

9 9 3.9e-05 0.0036 19.1 1.6 1 23 278 300 278 300 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0045	0.42	12.6	4.4	1	23	54	76	54	76	0.99
2	9	0.017	1.5	10.8	0.7	3	23	84	104	82	104	0.97
3	9	1.5	1.3e+02	4.7	1.7	2	23	111	132	110	132	0.95
4	9	6.2e-05	0.0057	18.5	0.5	1	23	138	160	138	160	0.97
5	9	0.0072	0.66	12.0	1.6	1	23	166	188	166	188	0.96
6	9	2.6e-05	0.0024	19.6	1.1	2	23	195	216	194	216	0.97
7	9	0.00017	0.016	17.1	4.0	1	23	222	244	222	244	0.99
8	9	4.5e-05	0.0042	18.9	0.7	1	23	250	272	250	272	0.99
9	9	3.9e-05	0.0036	19.1	1.6	1	23	278	300	278	300	0.99

Sequence Information

Coding Sequence: ATGAGCGGGGTTTTAATTtatgacaaattttatttcagatcCCCCGGGGTTTCCAAATTAATAATTCCCCGCCTCCCCGAAAATGACACTCGCGGTTCCGATTCCAAATCAGCCGAGTATAAACCCAAATACATACTGTCATCTGACGGCGTGAAGTTGTTCACCTGCGACTTCTGCGATCACAAAACCAAACGGGTCGTCAACATGAAAAAGCACGTCAAGACACATTCCGACGAGAAGCCTTACGGCTGCAAGCTTTGCAGTTACAGGTCCCGATTTCCCGAGGGTCTTAAGTACCACATGTTGAAACACACCGGCGCGAAGAAAGTCGTCTGCGACCGCTGCGCTTATAAGTGCCACACGGAAGGAGTTTTGAGGCTGCACATGGCGAAACATTCGGGCGTGAAGGCGTTCAGTTGCGACCTGTGCCCTCAAAAATTTACTTTCTCCGGAAGCTTGAGGGTTCACAGgctaatacacaccggcgagaagccgttcgctTGTAACGTTTGCGATCACAAGACCCTACGTTTGATGGATCTGAAACGCCACATGGAAACGCATAAAAACGAGAAGCCCATCGAGTGTACcgtttgcgattttaaatgcgcGCGACCTGTGTATTTGAAGCGGCACATGTTGacgcataccggcgagaagAACTACAAGTGTCATCTTTGCAGCTACGAGTGCAATCAGGCCGGGAATTTAAGGTCGCACTTGCTaacgcacaccgacgagaagccgtttaaGTGCGAACGTTGTGGATTCGTGGGCAAGACCGCCAGGTATTTAAAGTTGCACATGCGAGTGCATTCGGATGAGAAGCCGTTCAAGTGTGACCTCTGCGAATACGCGTCCAAGTTTAAAGGTAATCTAACGAAGCATATGACAACGCACGAGAAACCGCTCAAGTGCATCGTCTGTGAATGTACTTGTAAATCGGGAAGGGATTTTAAAAAGCACGTGTCGTCACATGCAAAGGACAATGCACCTTGA
Protein Sequence: MSGVLIYDKFYFRSPGVSKLIIPRLPENDTRGSDSKSAEYKPKYILSSDGVKLFTCDFCDHKTKRVVNMKKHVKTHSDEKPYGCKLCSYRSRFPEGLKYHMLKHTGAKKVVCDRCAYKCHTEGVLRLHMAKHSGVKAFSCDLCPQKFTFSGSLRVHRLIHTGEKPFACNVCDHKTLRLMDLKRHMETHKNEKPIECTVCDFKCARPVYLKRHMLTHTGEKNYKCHLCSYECNQAGNLRSHLLTHTDEKPFKCERCGFVGKTARYLKLHMRVHSDEKPFKCDLCEYASKFKGNLTKHMTTHEKPLKCIVCECTCKSGRDFKKHVSSHAKDNAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -