Dpar043070.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- ZFY
- Assembly
- GCA_958336345.1
- Location
- OY284483.1:28770216-28772740[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00078 0.072 15.0 1.9 1 23 279 301 279 301 0.97 2 15 1.8e-05 0.0017 20.1 0.4 3 23 306 326 305 326 0.99 3 15 1.5 1.4e+02 4.7 0.1 6 23 331 349 331 349 0.88 4 15 0.21 20 7.3 2.1 2 23 352 373 351 373 0.96 5 15 9.2 8.5e+02 2.2 5.4 2 15 380 393 379 402 0.73 6 15 0.11 10 8.2 7.2 1 23 421 443 421 443 0.98 7 15 0.0013 0.12 14.3 0.2 1 23 449 472 449 472 0.94 8 15 0.012 1.1 11.3 0.2 3 23 515 536 514 536 0.96 9 15 4.3 4e+02 3.2 1.1 3 23 562 583 560 583 0.92 10 15 0.43 39 6.4 0.3 2 23 585 606 584 606 0.97 11 15 0.0075 0.69 11.9 1.7 2 23 629 651 629 651 0.95 12 15 0.015 1.4 11.0 0.5 1 23 662 684 662 684 0.96 13 15 0.0009 0.083 14.8 1.7 1 23 685 708 685 708 0.92 14 15 0.00035 0.032 16.1 0.6 2 23 753 775 752 775 0.92 15 15 0.0048 0.45 12.5 0.2 2 23 802 823 801 823 0.96
Sequence Information
- Coding Sequence
- ATGACGGTAAAGATTTGCAGGGTTTGTTTCGAGGAGGGCGACGACTTAGAAAGCTTAGGAAGTGGAACCAACTCTTACGGACACAAATTGGCTTCCTGCGTACCAGAAATAGACGTATACGTAGTTTGCAACCCCAGCATTTGCAGCACGTGTTTGCCGATGGTGGAAGTGGCGTATGCACTTCGTGAAACATGCATCGAAAACGAAAGGAAATTCAGAACTAAAAAGGTCAACGCTATTAGGGGAAAGTGTGAGGTTCAAACGGCCAAGAGAAACCCTGAGACAGAGAAACCCGAGACGGTCATTACAGAACATGTCGATGCGATCGAGAACAATCAAATTCACGTCTCGGTCATTTTTAACAACTGTTTCAATGAGAGTTGTGTGCCCCCGGTCACGATTAAGGAAGAAATTACCCTGACCGACGATTTCGATTCGCCCAAATCCGCTTGCGCGACGAACCTCGATGAAGGAAGGAGTAAAGACGAGGTGTTAGGTCAAAATTTACGCGAGACGTTTAAGTCGGAAGACGAACTCATCAGTTCTCTGAATGAAATGTGTGCGGATTTAAAAAACTTGGGGGAAATTACGCGTGCAAGCGATGCAGGAGAGACGAGCGCGCAGTTATTCAGCGATGGTGAAAGCGAAGCAAGTTTCGAATTGGATCTGGACTCGTTGAACTTATTCAGCGAGGATGAAATGAAGAAATCCCAAGGGGAGACTAAGAACGAACGGATGAAAGTGAACAAGATAGTATCGTGTAAAGTTTGTAAAGAAATGCACGATGAGAATTACATCAGTGCGCACATGAAAACGCACGACGTGCGGAGCACTTACGATTGCGGACGATGCGACAAGACTTTTTCGGATACCTGCGAGTTAGAGTCACATAGTTTAACTCACCTGAAAAACCTGTGCGATATCTGTGGGAACGTATTCAAGTCGAAAAGTGATTTGGTCGAACACAAGCGGACTCACGTGACCGTGTGTTGCGGAGAGGAATTCTCAACGGGCAGTTTGTTACAGTTACACGCTTACCAAAAGCACGGGAAGACCTGCGGAATTTGCAAGAAGACTTGCGACAGTTTCAATGTGCTGTTCCTTCACATGCTCGAGCACATGGGCGAGGATAAGCTTCGCTGCTGCAAATGTAAGAAGACGTTCTCAAGCGACACACTCAAGCTCGGCCATCGCTGCGAGTCGCACGACGGAGATCAAGAACAAGATCGTGGCGTTAAAAAGAACCAACAACGAAAAAAGTTTCAGTGCAAATATTGCCAGTCGCGGTTTAAAAAGAGGAGGACTTACGTGTTACACTTGAGGCATCACCAACGTAAAGGTAATTTTGAGTGTGATCGATGCACTGCCTCTTTCGCATTGAAATCCGAATTGGAGAAGCACCTCTCGGAGGAACACGGCCCAATCAAGCAGCATGAATCGGATGTGAACATTCCGGAAGTATTAAATGGCAACTGCGGGGCATTGAGTTTTTCCCGTGAGCAAAGTGCAGGCACAGATTCCATCGAAACAAACTGGAATATGTGCCAACTTTGTCCGGGTAAGTTTCAAGACCCCTCGTTGCTGACTCAACACCTATTAAGAGATCACTGCGTGAAGACGGCCAGCATCGAACTGGTCGATTATCAAAAATCAAATCTAGTCGAGACCCCCGTCCGGCTTCACTGTTACGCCTGTCAAGAGGTGTACATGAACGTGAACCTATACTTGAAACACATGAAATTATTTCACAGCAAGTGCACCGTTTGTAACCTAAGATTGAACGACGTAAGAAATGTAATAGAACACGTACAGCGACACTACAAGAACAAGAAAGAAGACTGCAAGCTTTCGCAAACGCACTTGTCGGTGAAGAGCGAGCTACCGTACTGCGAACTCTGCCAGACCGAGTTCCCGGACAAGTCCTGCTACAACGTGCACATGGATAAGTTCCACAAGAAGGGCTTTCGCTACTCGACCAAGCTGTACAGTTGCAAAATTTGCTACGACGTGTTCGATACGAAGCGGGAATTAAGAGAGCACGGACAGGAACACTACGTATGCGTCCATTGCAAAAAGACTTTCGCGTTAAAAGCAAGCCTGCGACAACATGTGATCTTTTACCACAATAATTCTTCAAAGTCTACAGCGAGTGCTGCTTTAAATCAACGAAAGAGGGCGCCTTATCGCCGCTTAACCTTAAATTCGCAGGCTTCCTcttacagtgtgtcccaaaaacaAATCGTGAGGTTTCACAAGACATGCAAGACGTGCGGTGAAGTTTTCAGCAATACTAAGTTTTTGATGAGGCACATCTACGCCGTGCATAGCCGGTGCACTATTGAATGTGGCATGGAAAATGGAAGCGAAGATGAAAATGTGATGGTGCCGGCACTGAGTGCAAGCCGTTGTGATATCTGTCAGGAACAGTTTGACACAGTCGATAAATTAAAAGTGCACGTTTCAGTGCACATTTAA
- Protein Sequence
- MTVKICRVCFEEGDDLESLGSGTNSYGHKLASCVPEIDVYVVCNPSICSTCLPMVEVAYALRETCIENERKFRTKKVNAIRGKCEVQTAKRNPETEKPETVITEHVDAIENNQIHVSVIFNNCFNESCVPPVTIKEEITLTDDFDSPKSACATNLDEGRSKDEVLGQNLRETFKSEDELISSLNEMCADLKNLGEITRASDAGETSAQLFSDGESEASFELDLDSLNLFSEDEMKKSQGETKNERMKVNKIVSCKVCKEMHDENYISAHMKTHDVRSTYDCGRCDKTFSDTCELESHSLTHLKNLCDICGNVFKSKSDLVEHKRTHVTVCCGEEFSTGSLLQLHAYQKHGKTCGICKKTCDSFNVLFLHMLEHMGEDKLRCCKCKKTFSSDTLKLGHRCESHDGDQEQDRGVKKNQQRKKFQCKYCQSRFKKRRTYVLHLRHHQRKGNFECDRCTASFALKSELEKHLSEEHGPIKQHESDVNIPEVLNGNCGALSFSREQSAGTDSIETNWNMCQLCPGKFQDPSLLTQHLLRDHCVKTASIELVDYQKSNLVETPVRLHCYACQEVYMNVNLYLKHMKLFHSKCTVCNLRLNDVRNVIEHVQRHYKNKKEDCKLSQTHLSVKSELPYCELCQTEFPDKSCYNVHMDKFHKKGFRYSTKLYSCKICYDVFDTKRELREHGQEHYVCVHCKKTFALKASLRQHVIFYHNNSSKSTASAALNQRKRAPYRRLTLNSQASSYSVSQKQIVRFHKTCKTCGEVFSNTKFLMRHIYAVHSRCTIECGMENGSEDENVMVPALSASRCDICQEQFDTVDKLKVHVSVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -