Dpar030990.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284480.1:36375138-36376462[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.28 26 6.9 0.1 8 21 104 117 103 118 0.93 2 9 2.8e-05 0.0026 19.5 1.6 1 23 176 198 176 198 0.98 3 9 3.3e-05 0.0031 19.3 4.3 1 23 204 226 204 226 0.96 4 9 0.00027 0.025 16.4 0.9 1 23 232 255 232 255 0.96 5 9 5.6e-06 0.00052 21.7 1.1 1 23 263 285 263 285 0.99 6 9 6.4e-05 0.0059 18.4 1.4 1 23 291 313 291 313 0.97 7 9 0.00032 0.029 16.2 1.3 1 23 319 342 319 342 0.98 8 9 0.0018 0.16 13.9 4.6 1 23 356 378 356 378 0.97 9 9 3.5e-05 0.0033 19.2 4.2 1 23 384 407 384 407 0.97
Sequence Information
- Coding Sequence
- ATGGAAGAAGAAACAATACTCTGTTGCATTTGCCTCAACTCGACGCTTTTATTCTTTAAAACGAACGACTGTGATTCTAAATGTGTTCGATGGCTACAGAAACTAATCTCTTGCGTGCCTGAAATCGAATGGAGTGAGAAGTGGATCTTATGCGTAACTTGCAGTACCAAGCTCGACAGAATGTACGGCTTCAAGATAGAGTGCATTGACTTGGAAATAAAACGCAAAGACAAAACCTTAGATATTCAAAACagtcaagaaaaagaaaatcaaagtaAAGCGAAACATGATGAAGAAAACATCGGCACTAAAGTGTTTAGATCAAAACCTTCTTTAAAAATGCACATGAAGAATTATAATGAAAATTTGGAGCACATACAATTCCTTGATCCTTCAAGCGTAATTgagaatgttaaaaataatgttcGAAAACTCAGTGAAATTCGAATTAAGAAGAAGTCTTCTGATGACAACCCTCAACTCTTACAGCGCATGCATGAAGCACATCCGGAAGAGGAGGCACTATTTAGGTGTGATGAATGCAACAGCGCTTTCAATTCATCTTCAAACCTCATGCAGCACAAGAAGAACCACCTGGGAAAACGAACGCACATCTGCAGCCACTGTGGGAAGGGTTTCATAACGAAGGGGAATTTAAACGTGCACGAAAAGCATCATTTAAATAAACGAGAGTACGAGTGCGACGTTTGCACAAAGCGATTTAACACCCGCAAAGACATACGCTCGCATAAATTAGTTGTGCACACGGACCCGAAAGAATGGACTTACGTGTGCAGTTACTGCGATAAAAGATTTCCGATCAAGTCGAATTTAGACCTGCACACGCGGAGGCACACCGGAGACAAGCCATTCGCTTGCCACCTGTGTGAAAAAAGATTCGTTGAGAAGGTCGTCTTGCAGAAGCATATTAGATCGCACTCGAACGTGCGTGCCTTCAAGTGCAGCGAGTGCGATCGGAGGTACAAAGACAAGAAGATCCTGGAGATTCACTTGAAGAAGGTCCACGATATGGGGGACGCAAAGGTGCCTGTACggattaaaaaatacttttgttCGCTCTGTCCTAAAtcgtattttgcaaaaaataaactgaCGAGGCACATGTGTTCGCACACGGGCTTGAAGCCGTTTTGCTGTGAGGTTTGCCAGAAAAAGTTTACAGACAAGTCTTACGTTAAACAGCACTTGAAGACTGTGCATAATTTTATTGTGAATAAAACAGACAATTAA
- Protein Sequence
- MEEETILCCICLNSTLLFFKTNDCDSKCVRWLQKLISCVPEIEWSEKWILCVTCSTKLDRMYGFKIECIDLEIKRKDKTLDIQNSQEKENQSKAKHDEENIGTKVFRSKPSLKMHMKNYNENLEHIQFLDPSSVIENVKNNVRKLSEIRIKKKSSDDNPQLLQRMHEAHPEEEALFRCDECNSAFNSSSNLMQHKKNHLGKRTHICSHCGKGFITKGNLNVHEKHHLNKREYECDVCTKRFNTRKDIRSHKLVVHTDPKEWTYVCSYCDKRFPIKSNLDLHTRRHTGDKPFACHLCEKRFVEKVVLQKHIRSHSNVRAFKCSECDRRYKDKKILEIHLKKVHDMGDAKVPVRIKKYFCSLCPKSYFAKNKLTRHMCSHTGLKPFCCEVCQKKFTDKSYVKQHLKTVHNFIVNKTDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465333;
- 90% Identity
- iTF_00465333;
- 80% Identity
- -