Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:11393584-11395308[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00084 0.078 14.9 2.4 1 23 73 95 73 95 0.99

2 15 5.4e-05 0.0049 18.7 1.4 1 23 101 123 101 123 0.98

3 15 0.036 3.3 9.8 9.2 1 19 129 147 129 151 0.94

4 15 0.0069 0.63 12.0 1.0 1 23 157 179 157 179 0.97

5 15 0.00067 0.062 15.2 3.3 1 23 185 208 185 208 0.95

6 15 0.0058 0.53 12.3 6.3 2 23 215 236 214 236 0.97

7 15 0.0026 0.24 13.3 8.8 1 23 242 264 242 264 0.99

8 15 0.0014 0.13 14.2 1.0 3 23 272 292 270 292 0.95

9 15 0.0055 0.51 12.3 3.2 3 23 300 320 298 320 0.98

10 15 0.00013 0.012 17.4 1.2 1 23 326 348 326 348 0.98

11 15 0.47 43 6.3 4.4 1 23 354 376 354 376 0.96

12 15 0.036 3.3 9.8 3.3 2 23 383 404 382 405 0.94

13 15 0.043 3.9 9.5 2.1 1 23 410 432 410 432 0.98

14 15 0.00089 0.082 14.8 3.9 1 23 438 460 438 460 0.97

15 15 0.0017 0.15 14.0 2.2 1 23 466 488 466 488 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00084	0.078	14.9	2.4	1	23	73	95	73	95	0.99
2	15	5.4e-05	0.0049	18.7	1.4	1	23	101	123	101	123	0.98
3	15	0.036	3.3	9.8	9.2	1	19	129	147	129	151	0.94
4	15	0.0069	0.63	12.0	1.0	1	23	157	179	157	179	0.97
5	15	0.00067	0.062	15.2	3.3	1	23	185	208	185	208	0.95
6	15	0.0058	0.53	12.3	6.3	2	23	215	236	214	236	0.97
7	15	0.0026	0.24	13.3	8.8	1	23	242	264	242	264	0.99
8	15	0.0014	0.13	14.2	1.0	3	23	272	292	270	292	0.95
9	15	0.0055	0.51	12.3	3.2	3	23	300	320	298	320	0.98
10	15	0.00013	0.012	17.4	1.2	1	23	326	348	326	348	0.98
11	15	0.47	43	6.3	4.4	1	23	354	376	354	376	0.96
12	15	0.036	3.3	9.8	3.3	2	23	383	404	382	405	0.94
13	15	0.043	3.9	9.5	2.1	1	23	410	432	410	432	0.98
14	15	0.00089	0.082	14.8	3.9	1	23	438	460	438	460	0.97
15	15	0.0017	0.15	14.0	2.2	1	23	466	488	466	488	0.97

Sequence Information

Coding Sequence: ATGACCTTGAAAAGAGATGCAGATCCGATACTTGCGGCTGCAAGTGTTACCAAGCACTCATGTGATGAGACATACTGGCGCGAATCCTTTCAAACGAGACGCATTACTCAGAAAGACTTGGAGAATATTTTTCGTAAACGTTGCGTCGTCGTCTTGACCCCCTGCGCACTGCCAACCGTACGAAAACAGCCGCGACTTGGCAACCATGAAAATGTATACAGATGCGATCATTGCGGTTACCAGTGTGGGAAACTCGCAGCGTTAAAAACTCACGTAAGAATACACACCGGCGATAAACCGTTTGAGTGTGAGAAGTGCGATTACAGAAGCAGAACGCGCGAGCAATTACGTGTACACTTGATGAAACACAACAACGAGTATCCTTTCAGATGTAAGAAATGTGATTTTAGATGTAGAACTTCACACCACTTAAAAAGACACGACGTCACTCACACCGATGAGAAACCGTTCGCGTGTGAGAAATGCGACTACAGAAGCAGACTGCATCCGAATTTACTTCGCCACTTGTTGATCCACAATAACGAAAGGCCTTTCAAATGTAACAAGTGTGACTATGAATGTACAACTTTGCAAAATTTAAGAACCCACGCCATTAAGATGCACGGCGATGGAAACCGGCTTACGTGCAAGAAGTGCGATTATCGATGCGGGACGTATCACGACTTACGACGGCACTTAACGAcgcataaaaatgaaaaactctTCAGATGTAAGATATGCGATCATAGATGTAAGACTTTACAACACTTAAAAACTCACGTTATGACTCACACCGACGAAAAACCGATTGCGTGTGAGAAATGTGACTACAGGTGCAGATCGCGTTATACATTGATTCAACACTTAGTGATACACGACAATGAAAAGCCTTTCGGATGTAGCACATGTGATTTTAAATGCAGAAGACCGAGAACTTTAAGAGAACACCTTCTGACGCACACCGATGAGAAACCGTTTAAGTGTAACGAATGCGATTACAGGGGCAGAACGCGTCTAAGTTTACGCCGCCACTTAATGGTGCACAGTGATGAAAAGCCTTTCAGATGTAACGCATGCGATTTTAGGTGTAGaagttcaaataatttaaaatttcacgtGCTGAGGCACACCGGTGAAAAACCATTGAAGTGTAGCAAGTGCGATTACAGGACCAGACTGCCCACGAGTTTAAGCAGACACTTTAAGGCCCATCACGTCGAACAGCCGTTCAGATGTGACGTGTGCGATTTTAGATGTGGAACTTCGCGCATTTTGAGTAAGCACATCTTGACGCACACCGacgaaaaattgttcaaatGTAACAAATGCGATTTCATTTGCACAAAACGGGATTACTTACAGAAGCACCTGGTGATACATAATGGCGAGAAAACGCATAAATGTAACATTTGCGATTTCAGAAGCGTACATCCTAGCTCTGTAAGACAACATATGCTTGCGCACAGGAAGAAAAAGTAG
Protein Sequence: MTLKRDADPILAAASVTKHSCDETYWRESFQTRRITQKDLENIFRKRCVVVLTPCALPTVRKQPRLGNHENVYRCDHCGYQCGKLAALKTHVRIHTGDKPFECEKCDYRSRTREQLRVHLMKHNNEYPFRCKKCDFRCRTSHHLKRHDVTHTDEKPFACEKCDYRSRLHPNLLRHLLIHNNERPFKCNKCDYECTTLQNLRTHAIKMHGDGNRLTCKKCDYRCGTYHDLRRHLTTHKNEKLFRCKICDHRCKTLQHLKTHVMTHTDEKPIACEKCDYRCRSRYTLIQHLVIHDNEKPFGCSTCDFKCRRPRTLREHLLTHTDEKPFKCNECDYRGRTRLSLRRHLMVHSDEKPFRCNACDFRCRSSNNLKFHVLRHTGEKPLKCSKCDYRTRLPTSLSRHFKAHHVEQPFRCDVCDFRCGTSRILSKHILTHTDEKLFKCNKCDFICTKRDYLQKHLVIHNGEKTHKCNICDFRSVHPSSVRQHMLAHRKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -