Dpar025969.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- topi
- Assembly
- GCA_958336345.1
- Location
- OY284479.1:34862831-34869840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0014 0.13 14.2 1.3 3 21 123 141 121 142 0.93 2 13 3.2e-06 0.00029 22.5 1.6 1 23 167 189 167 189 0.97 3 13 0.014 1.3 11.1 2.0 2 23 196 217 196 217 0.95 4 13 0.47 43 6.3 0.0 2 19 236 253 235 256 0.92 5 13 3e-05 0.0028 19.4 0.4 2 23 295 316 294 316 0.97 6 13 9.5 8.7e+02 2.1 0.1 1 21 322 342 322 343 0.87 7 13 0.52 48 6.1 3.1 2 15 359 372 358 382 0.79 8 13 0.0048 0.44 12.5 0.2 1 23 526 548 526 548 0.97 9 13 2e-05 0.0019 20.0 5.4 1 23 554 576 554 576 0.98 10 13 0.041 3.8 9.6 0.1 1 23 582 607 582 607 0.96 11 13 0.21 19 7.4 2.9 1 23 613 635 613 635 0.86 12 13 2.8e-05 0.0026 19.5 1.6 3 23 643 663 641 663 0.98 13 13 3.7e-05 0.0034 19.2 3.1 1 23 669 692 669 692 0.98
Sequence Information
- Coding Sequence
- ATGAACAATTCCGATATCAGTTTGATAAAGCTGCACCAAATCGACCCTGATGGAACCGTAAGCTCCTATCAGTACGAGGTGGACAATGTATCGCAGGAGTTCATAGTGAAGACGACGATCGCGCCGATGAATTTCACCACAAGCTACGAGAGCGCCGCAGAAGAAGACAAATTTAACTTCACGTACCGGTGTTTGGAGCTGGAGAATTCGTCGATACGCGTTATCAAGATCGGCGGCGTGGAGGATCTCAACCCCATGAACTACGCTACGGAAATCACCACGGTCCTCAACGATCCATGCGAGGAAAATTCAGTAATTCAGCCCCAGCGCGAGTCGAGGATTCCAAATATTCCGACGATGATTATATGTCAGAATTGCGACACGAATTTTCCAACCAAGTACCAATACCAAAGACACCAGTGCGAGTTTAACGCGGAAAAAGTCGTGCTGAAGTCCAACGTCGACATGAAAGACATCGACAAGGGAATGCGCATGAAGTTCGATTGCACCACCTGCGGCAAGCAATTCGTGAGCAAAAATAACTTAGAACGACACCAGACGAGTCACGATGAAACCAACATCAACGTCTGCGAGCACTGCAATAAACAATTCGTGAGCGAAAACCGTTTGAGGATCCACAAGGAAAACCACTGCAAGAAAGCAGGCGACATTTCCAAGTTCTACCGAAGCGACGTCACAGTTTGGAAGTGCCTCAATTGTTACCAGGTCTTTGCCACCGCCGCGTCAGCCAATAGGCACGCGGAGAACTGCTTGGAACCCATCGAGAACCGAAATAGTCAAAACTCCAGTTCTTCAGATGAAAACTTCTCAGAGACAAAGACAGACAAGAACGTGCAGAAATTCCTCACGGAGATTCTGCTTCAATGCGAATATTGCAATCGGACCTACGCCGACAAGAATTGGCTTTTAGTTCATCAGAAAATGCACACCACCTCCACCAACTACGAGTGCGTCACCTGCAACGATTCCTTCGACTCTTACGTTGCCGCCTCCAAGCATTGGCTGACGAAATGCTCAGACGAAGCAAATCTATTTTACCTCCCCAAGCTGACCTACTGCGAATACTGCGATCGCACTTTCAAATCGCACGAGATCTTCTACACACATAAGTATAAGAAAAAACATTACACACCTAAAATTTACACGCCTTTGAAAACCGTGGAAGGCGAAGGCGTTGCTTTGAAAACCGCGGAAAACAAGGAGGCCATTGTGAAGAAAAGCACGGAAAACAAGGAGGCCATCGTGAAACTCATCGAAAATGTTTTGGTTGCCATGAATTTGCCGAACAGCGAGAATAGCAACAAAAAGGAAGCGGACACCGTGATCAAAACGGAGACCTTCAGCGAAACAAGCAGTTTCAATAGTGGCACCCAGGAAAATGCGGAGAAGAAACGGCGAGGGAGGAAGAAGAAGTCACCTCGGCAGACCACCAAAGCGAAACGTCTATCGGCAATCGTCAGTAAGGGTTATAAATATCAATGCGAGCGTTGCATCAAAGTTTGGGATAGCGTTGCGGACTTAGAAGACCATCGTGAGATGGAACATCCGGCGAAATTCAAATGTGAAGAATGCGGACAGGTAGTACATAGTGCGAAAGCTTTGCTAATTCATAGCAGGGCCCATCAAAGCCTGAAGCCATACGTTTGCGAAATATGCAAGCGTTGTTACTCACAAACGTCCCACTTGTGGCAGCACATGCGCTTCCATCaagGTATTAAGCCGTTTGCTTGTCCTCACGAAGGATGCGAAGCCCGCTACACAATCAGACCCGACCTGAAGGACCACATTCGCAAGGCGCACACCAGAGAAAGACCTTTCAAGTGCTCGGTCTGCGACAAGTGTTTTTTGACGGGTTCTGTTTACTACCAACACCGCCTCATACACACGAATGACCGTAGATACGGCTGTGATATTTGCCACAAGAGATTTTTCCGCGCGGACGCCCTCAACAATCACCGGCGAATTCACACGGACGAAAGGCCCTATCCCTGCGAAATGTGCGAAAGACATTTTAGGCAGAAGGGTGATCGCAACAAGCACATGCGAACTCAGCATCCAGTTtag
- Protein Sequence
- MNNSDISLIKLHQIDPDGTVSSYQYEVDNVSQEFIVKTTIAPMNFTTSYESAAEEDKFNFTYRCLELENSSIRVIKIGGVEDLNPMNYATEITTVLNDPCEENSVIQPQRESRIPNIPTMIICQNCDTNFPTKYQYQRHQCEFNAEKVVLKSNVDMKDIDKGMRMKFDCTTCGKQFVSKNNLERHQTSHDETNINVCEHCNKQFVSENRLRIHKENHCKKAGDISKFYRSDVTVWKCLNCYQVFATAASANRHAENCLEPIENRNSQNSSSSDENFSETKTDKNVQKFLTEILLQCEYCNRTYADKNWLLVHQKMHTTSTNYECVTCNDSFDSYVAASKHWLTKCSDEANLFYLPKLTYCEYCDRTFKSHEIFYTHKYKKKHYTPKIYTPLKTVEGEGVALKTAENKEAIVKKSTENKEAIVKLIENVLVAMNLPNSENSNKKEADTVIKTETFSETSSFNSGTQENAEKKRRGRKKKSPRQTTKAKRLSAIVSKGYKYQCERCIKVWDSVADLEDHREMEHPAKFKCEECGQVVHSAKALLIHSRAHQSLKPYVCEICKRCYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKAHTRERPFKCSVCDKCFLTGSVYYQHRLIHTNDRRYGCDICHKRFFRADALNNHRRIHTDERPYPCEMCERHFRQKGDRNKHMRTQHPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465304;
- 90% Identity
- -
- 80% Identity
- -