Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:8775779-8776738[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0032 0.3 13.1 3.6 1 23 10 32 10 32 0.98

2 11 7.9e-05 0.0073 18.1 2.0 1 23 39 61 39 61 0.98

3 11 0.00022 0.02 16.7 5.6 1 23 67 89 67 89 0.98

4 11 0.0047 0.43 12.6 1.7 3 23 98 118 96 118 0.98

5 11 5.2e-05 0.0048 18.7 2.1 1 23 124 146 124 146 0.98

6 11 1.8e-06 0.00017 23.3 4.0 1 23 152 174 152 174 0.99

7 11 0.00017 0.016 17.1 1.1 1 23 181 203 181 203 0.97

8 11 4.6e-05 0.0042 18.9 1.2 1 23 209 231 209 231 0.99

9 11 0.003 0.27 13.2 1.5 1 23 237 259 237 259 0.99

10 11 0.0014 0.13 14.2 1.1 1 23 265 287 265 287 0.93

11 11 5.6e-06 0.00052 21.7 2.2 2 23 292 313 291 313 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0032	0.3	13.1	3.6	1	23	10	32	10	32	0.98
2	11	7.9e-05	0.0073	18.1	2.0	1	23	39	61	39	61	0.98
3	11	0.00022	0.02	16.7	5.6	1	23	67	89	67	89	0.98
4	11	0.0047	0.43	12.6	1.7	3	23	98	118	96	118	0.98
5	11	5.2e-05	0.0048	18.7	2.1	1	23	124	146	124	146	0.98
6	11	1.8e-06	0.00017	23.3	4.0	1	23	152	174	152	174	0.99
7	11	0.00017	0.016	17.1	1.1	1	23	181	203	181	203	0.97
8	11	4.6e-05	0.0042	18.9	1.2	1	23	209	231	209	231	0.99
9	11	0.003	0.27	13.2	1.5	1	23	237	259	237	259	0.99
10	11	0.0014	0.13	14.2	1.1	1	23	265	287	265	287	0.93
11	11	5.6e-06	0.00052	21.7	2.2	2	23	292	313	291	313	0.97

Sequence Information

Coding Sequence: ATGTTAACACATACAGGCGacaagccgttcagttgtgactaTTGCGATTATAAGTGTGGACAAGATAGATACTTGAAAAAGCACGTGCTAACGCACACTGGCGGCAAGAAACCGTTCAGCTGCGATCTCTGCGATTATCAATGTCGAGAACCTGGAAAGTTGAAGCGCCACATGTtaacacacaccggcgagaaaccattCAGTTGTAACACTTGCAATTACAGATGCCGACAACTCACAAACTTAAAGCAGCACCAATTAACGCACGTGAAAACTGAGAAGCCTTTCGgctgcgatctttgcgatttcaGATGTCGGCTGGTCGGCAATTTGAAGAATCACATGTTGACACACGATGGCAACAAGCCGTTCGTGTGTAACATTTGCACTTTCAGATGTCGCAAAGCCggtaatttgaaacagcacatgttaatacataccggcgagaagccgttcaaaTGTAAAttgtgcgattataaatgcacgcAAGCCGGAAATTTGAAGAAGCACATGTTGACACACGCCGAACACGCGAAGCCTTTCGCTTGTGAGCTTTGCGATTACAAAAGTCGAGAATCCGGAAACTTCAAACGGCATATGTTAAAACACACCGGTGAAAAACCGTACAAGTGTAATATCTGCGAGTACGAATGCTCTCGAAGCGAGCGCTTAAATGCGCATATTTTAATGCACACCGACGAAAGGCCTTTCAAGTGCGACCATTGTATATTTGCAACCAGAACATCTGCTTTATTAAATCAGCACCTGCGAGTTCATTCCGAAGAGAAGCCGTTTAAATGTGGCGAATGCAAATATGCAACTAAATTGCGGGAAAGTTTAAAAAGGCATATGTGGACGCACGAGAAACTGCTTAAGTGTAGTATTTGTGGATACACATGTAGCTTATCTAGCGATTTGAAGAAACACATTTCAACACATACCAGCGAAAATCCTTCCTGA
Protein Sequence: MLTHTGDKPFSCDYCDYKCGQDRYLKKHVLTHTGGKKPFSCDLCDYQCREPGKLKRHMLTHTGEKPFSCNTCNYRCRQLTNLKQHQLTHVKTEKPFGCDLCDFRCRLVGNLKNHMLTHDGNKPFVCNICTFRCRKAGNLKQHMLIHTGEKPFKCKLCDYKCTQAGNLKKHMLTHAEHAKPFACELCDYKSRESGNFKRHMLKHTGEKPYKCNICEYECSRSERLNAHILMHTDERPFKCDHCIFATRTSALLNQHLRVHSEEKPFKCGECKYATKLRESLKRHMWTHEKLLKCSICGYTCSLSSDLKKHISTHTSENPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -