Dpar015134.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284477.1:29811142-29822610[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0076 0.7 11.9 3.4 2 23 973 994 972 994 0.96 2 11 0.00036 0.033 16.0 3.3 1 23 1000 1022 1000 1022 0.98 3 11 6.5e-05 0.006 18.4 2.4 1 23 1028 1050 1028 1050 0.98 4 11 0.0034 0.31 13.0 0.1 1 23 1056 1078 1056 1078 0.96 5 11 0.057 5.3 9.1 0.7 1 23 1085 1107 1085 1107 0.98 6 11 0.00092 0.085 14.8 0.6 1 23 1113 1136 1113 1136 0.91 7 11 0.014 1.3 11.0 4.9 1 23 1142 1165 1142 1165 0.94 8 11 0.0011 0.098 14.6 0.2 3 23 1176 1196 1175 1196 0.97 9 11 3.6e-05 0.0033 19.2 0.5 1 23 1202 1224 1202 1224 0.98 10 11 3.2e-05 0.003 19.3 1.1 1 23 1230 1252 1230 1252 0.95 11 11 8e-07 7.4e-05 24.4 1.4 1 23 1258 1280 1258 1280 0.99
Sequence Information
- Coding Sequence
- ATGACATCAGCCCCTTATTTAGCAGTTAGGTGTTTAGTTGAATTAGCTCAATTAAATCAGGAAAGGTGTCCTATTGAATCTAAGATTATTCTTAACGATTTTTACATGGACGATGTTCTCACTGGTTCCAATTCTATTACAGAATTAAAGGAAATTCAACAGAATCTAATTGAGATACTTGGTCAAGCAGGATTTACTCTTCAGAAATGGAAAAtcAACAATGTAAGATTCTCTGAAAAGATAACTAAACGAAGTATTTTGTCAATCTCTTCTCAACTTTTTGACCCAATTGGACTACTTTCTCCTATTTTCGTCATTCCTAAGTTGATAATCCAAGAATTGTGGCAGATGAAGTTGGGATGGGACGAAGCATTACCCCATAATTTACACACTACATGGCTTCAGTTTCAAGATGAAATGAaggatattaacaaaataactGTTCCTCGATGCGTTATCTTACCAGATGCCATTTATGAAATTCATGCCTTTGCAGACTCATCAGAAAAGGCATATGGAACCTGTATTTACTTACGATCAATAACACCAGAGGAAAATTTTGTGACTCTTTTAGCTGCAAAATCCCGAATTGCACCTCTGAAAAAATTAACTCTTCCAAGATTAGAATTACTTGCCGCAGTTTTAGCTGTTCAATTAaccgaaaaattcatcaaaattataactctaaaaatatttaaagtttattattgGACTGACTCTTCGATTGTCCTTAGTTGGTTACAATCTCAACCGAATAGATGGGTTACGTTTGTTGCAAACCGAGTTTCTTTCATACAAGAATTCTCTAATGTTAATAATTGGCATTACATTCAAACGAATCTCAATCCAGCCGACGTCCTTTCTAGAGGAAGATCATCTACGAAACTAGCAAAAGATACCCTTTGGTGGTCAGgaccttattttttaaagttagatAGGCATCTGTGGCCTGAagataaatttaaagttcaagGGATTAAGACTGGAAATTTACCCGAtgagaaaaaatcaaaaatcgcTCTGGTAGTAACCGAAAATGGAAATTTAGATACAAAGTGGTTTGAAAGGTTTTCTACGTTAACTAAATTAGTACACACTATGGCTTACATATCGagattcaaaagaaattgttttctaAGTAGAGACAACCGAATTACGGAATTACTCAGCATAAGTGAATGCAACGAAGcattaattcaaattattaaattgtctcaattacaatatttttccttagaaattttaatattgtcaaaaaataaaccTATTACAAAGGGTCAGCTTGTAAGTCTCAACCCGTTTTTGGATGATTCGGGGCTCTTAAGGGTTGGAGGTAGAttaaaaaattcagaatttccTTTTGATAAAAAACATCCAATTTTACTTCCACATCAGGCTTACATTACAAAGTTAATTTTTGAATACTACCACCGTGTCTTACTACATGCTGGTGCAAATACTTTGCTTGGTAATATCAGACAAACATACTGGCCTTTGTCAGGGAAAAATCTAGCTAAAAAGATAGTACGAAATTGTATTCGATGCTTTGGATTCAACCCCAAAACTAATTTTCCTCTTATGGGAAATCTCCCGAAGGAACGCTTTAGCATCATGTACCCATTTCATAATGCGGGACTGGATTTTGCTGGACCCATAACAATTCGTGACAAACGAGGGCGCGGCAGTAAATCTATTAAGGCATATATTGCAGTTTTTGTGTGTTTTTCGACCCGTGCAATTCACTTAGAAGCAGTAAGCGATTTGAGTACTTCAGCTCTGATAGCTGCATTGAGACGTTTTGTATCTAGAAGGGGAAAACCCTCCAATATCTTTAGCGATAACGGTACAAATTTTCAAGGCGCAAATAATGAATTACATAATTTATACCAATTGTTCCGAAATAACTATGTTGAGATTGGTCAAACAGCTCATGCCATTGGCATTAAATGGAACTTTATTCCAGCAAATTCGCCACATATGGGCGGAATTTGGGAGGCGGGAGTTAAAAGCGTAAAATTtcatcttaaaaaaattttatttgaaacatctCTTATTTTTGAGGATTTGATGACTGTGCTCACGCAAATTGAGGCAATATTAAACTCACGTCCTCTATCCCCTCTGTCTACCGATCCTGAAGACTTGCAACCGTTAACGCCTGGACATTTTCTAATTGGAAGACCAGTAGCGATAATAGCAGATCCGGACGTTAAAGACATTGCTGTAACCAGACTAGACCGCTTTCAATATCTACAACGTTTAACTCAAGCATTTTGGAAACGATGGTCCGTGGAATACGTTACAACTTTACAACAACGTCAGAAATGGCGACAAGCCACCAAATCTATCAAGGTTGGATCATTGGTCTTGATTCGCAACGATAATTGTCCACCATGTTACTGGAACTTAGGACGAGTGCATGAAGTCCACTCCGGAAACGACGAAGTCGTTCGAGTCGTCACTCTGCGTTGTAAGAACGGTCTGATCAAACGGGCAGTTACCAAGGTTACTCCAGAAGATGGATTGTTTAATTTAGTATGCAGTCAATGTGCTAATGAAGTCAGTCGCTGGTACGTTTTTAAGCAACAGGTAGTTAGATCCTTCGAAATCGGTCGATGGTTACTTGAGAAaaagggaaaaactcctgataagTGTGATTTTAAATTGATCAGAAATAACGATGATGTAAGCCAACATTCCAACACATCGAATGCAAGTTCTGTAATACAAGACGTCGAGAGATTAAATTTAGTGGATGCACATTCTTCAGAAGTTAAATATATGCAAATAACTGCAATCCAAACTTATGTACAGAAAGAAAACTTGATTGAATCCAAAGACCATTTGTTGAGCAATATCTGTGATAGCACTACCATTACGAAACCagctagaaaaagaaaaactttggAAGATCTGATTTGTCGGATTTGCAATAAACAATGTGTCTCGACGAATTCTTTTAACCGTCATATTAAAACGCATGACAATAGCAGACCTTTTGTTTGTTGCAAGTGTGATAAGCCATTCAAGACTCAACAAGTTTTGACGGAACATTTGAAGAGGCATTATGATGATAGGAGGCACAAGTGTACAATGTGCGGTCAAAAGTTTTATGCCAAAGCTAGTTTAAACGATCATATGCGATCTCATACAGGAGAAAAACCTTTTTCTTGTAAGATATGCGAGAGGGCATTCGCTACGAAGGCCATCCTCAGGCAGCATTTAGTGGTACATACCACACGAGAGAAGAAATTTCAATGTGAAATTTGCAGTAGGTTTCTGCTCACAGCTGGCAGCTTAGAAACACACAAGCGCAAGCATTCCGGGATAAAGCCGTTTCAGTGTAGTGGATGTGAAAAAGCGTTTTTCACCAAAGAAGCGATGCAAAGACACTTCAGCGCCATTCATGACATCGACAACAACTTCTTGTGTGGTATGTGTTCTAAAGTGTGCAGCACTAAAGTTCATCTCAGCAATCACGTGAAAAAGAAACACTTGGGCATCGGTCGGCCAGTAAATGCAATCTGTTCTGTCTGTGGGAAACAGTGCGGATCAGCGGCCGAACTTAAAGTTCATGTTCGAGTGCACACTGGAGAACGGCCTTATATTTGTGACATCTGTGATAAGAGGTTCATCGCGAAAGGTAATTTGAATTCACATAAGCAAAGACACAGCGGGAAGAAACCGTTTCTGTGTAACCATTGTGGCAAAGCATTTGGAGAAAAATCGACTTTGAAAGTTCACGAGAGAATTCACACAGGGGAACATCCTTACAAGTGTAACATTTGTAATAAATCATACATTCAAAGCAGTGCATTAAGGACACACCTGAAAAGCCATTGGAAGTGA
- Protein Sequence
- MTSAPYLAVRCLVELAQLNQERCPIESKIILNDFYMDDVLTGSNSITELKEIQQNLIEILGQAGFTLQKWKINNVRFSEKITKRSILSISSQLFDPIGLLSPIFVIPKLIIQELWQMKLGWDEALPHNLHTTWLQFQDEMKDINKITVPRCVILPDAIYEIHAFADSSEKAYGTCIYLRSITPEENFVTLLAAKSRIAPLKKLTLPRLELLAAVLAVQLTEKFIKIITLKIFKVYYWTDSSIVLSWLQSQPNRWVTFVANRVSFIQEFSNVNNWHYIQTNLNPADVLSRGRSSTKLAKDTLWWSGPYFLKLDRHLWPEDKFKVQGIKTGNLPDEKKSKIALVVTENGNLDTKWFERFSTLTKLVHTMAYISRFKRNCFLSRDNRITELLSISECNEALIQIIKLSQLQYFSLEILILSKNKPITKGQLVSLNPFLDDSGLLRVGGRLKNSEFPFDKKHPILLPHQAYITKLIFEYYHRVLLHAGANTLLGNIRQTYWPLSGKNLAKKIVRNCIRCFGFNPKTNFPLMGNLPKERFSIMYPFHNAGLDFAGPITIRDKRGRGSKSIKAYIAVFVCFSTRAIHLEAVSDLSTSALIAALRRFVSRRGKPSNIFSDNGTNFQGANNELHNLYQLFRNNYVEIGQTAHAIGIKWNFIPANSPHMGGIWEAGVKSVKFHLKKILFETSLIFEDLMTVLTQIEAILNSRPLSPLSTDPEDLQPLTPGHFLIGRPVAIIADPDVKDIAVTRLDRFQYLQRLTQAFWKRWSVEYVTTLQQRQKWRQATKSIKVGSLVLIRNDNCPPCYWNLGRVHEVHSGNDEVVRVVTLRCKNGLIKRAVTKVTPEDGLFNLVCSQCANEVSRWYVFKQQVVRSFEIGRWLLEKKGKTPDKCDFKLIRNNDDVSQHSNTSNASSVIQDVERLNLVDAHSSEVKYMQITAIQTYVQKENLIESKDHLLSNICDSTTITKPARKRKTLEDLICRICNKQCVSTNSFNRHIKTHDNSRPFVCCKCDKPFKTQQVLTEHLKRHYDDRRHKCTMCGQKFYAKASLNDHMRSHTGEKPFSCKICERAFATKAILRQHLVVHTTREKKFQCEICSRFLLTAGSLETHKRKHSGIKPFQCSGCEKAFFTKEAMQRHFSAIHDIDNNFLCGMCSKVCSTKVHLSNHVKKKHLGIGRPVNAICSVCGKQCGSAAELKVHVRVHTGERPYICDICDKRFIAKGNLNSHKQRHSGKKPFLCNHCGKAFGEKSTLKVHERIHTGEHPYKCNICNKSYIQSSALRTHLKSHWK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -