Dpar000634.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:3721665-3727846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0008 0.073 15.0 0.4 1 23 39 61 39 61 0.97 2 24 0.014 1.3 11.0 1.7 1 23 67 89 67 89 0.98 3 24 0.0004 0.037 15.9 2.9 1 23 95 117 95 117 0.98 4 24 0.11 11 8.2 8.1 1 23 123 145 123 145 0.97 5 24 0.00058 0.053 15.4 2.7 1 23 151 173 151 173 0.98 6 24 8.9 8.2e+02 2.2 4.1 1 17 179 195 179 198 0.90 7 24 0.00018 0.017 17.0 0.1 2 23 237 258 237 258 0.97 8 24 0.28 26 6.9 0.1 3 23 266 286 266 286 0.98 9 24 0.0019 0.17 13.8 4.3 1 23 293 315 293 315 0.98 10 24 1.2 1.1e+02 4.9 1.1 3 23 323 343 321 343 0.96 11 24 0.0016 0.15 14.0 2.2 1 23 349 371 349 371 0.97 12 24 0.51 47 6.1 4.8 1 23 376 398 376 398 0.98 13 24 0.13 12 8.0 2.2 1 23 404 426 404 426 0.97 14 24 0.0018 0.16 13.9 2.5 1 23 460 482 460 482 0.98 15 24 0.047 4.3 9.4 6.6 3 23 490 510 488 510 0.96 16 24 0.00014 0.013 17.3 6.6 1 23 524 546 524 546 0.99 17 24 0.15 14 7.8 4.2 2 23 551 572 550 572 0.97 18 24 0.49 45 6.2 3.0 1 23 578 600 578 600 0.96 19 24 0.00098 0.091 14.7 1.7 3 23 608 628 606 628 0.98 20 24 0.006 0.55 12.2 1.4 3 23 636 656 634 656 0.97 21 24 0.48 45 6.2 2.3 1 23 662 684 662 684 0.97 22 24 0.00026 0.024 16.5 2.1 3 23 692 712 690 712 0.95 23 24 0.0042 0.38 12.7 2.0 3 23 720 740 718 740 0.97 24 24 7.4e-05 0.0068 18.2 1.5 1 23 746 768 746 768 0.97
Sequence Information
- Coding Sequence
- ATGAGTCAAGCAAAGGATAATAAAGTTGGAAAAGTATCTGAGGAAGGtctttttaattactgtgaAAACGAATGTCGACGGACTTTCAAATCCGAAACTGCAGCGGAAAGAAATTTCGAATGTCGCGCATGCGGCTCTAAATTTAAAACCAGAAACAATTTAGAAGAGCACTTGCtcatacacaccggcgagaagccatttAGGTGTGCcatttgcgattacaagtgtcgaGCCTCCAGATACCTGAAACTGCACGTGCTAgtgcacaccgacgagaaaccttTTCGTTGCGACGTTTGCGACTATAAATGTCGATTTTCCGGAAATCTGAAACAGCACGCGCTAACGCACACCGACGAAAAGCCCTTCCATTGCACCgcttgcgattacaagtgtcgaCAAACTACGAAACTGAAAAGGCACATGTCGagacacaccggcgagaagccgttcagctgcgatctttgcgattacaagtgctcGCAGGCCGGCAGTTTGAAGCAGCACAGGCTGagacacaccggcgagaagccgtacgCTTGCAACCTTTGCGAGTATAAATGTCGACAAGCCGACACCTTGAAATGCCACAAGGTGCATGGACAAGAGAAGCTTGAAGCAACACATGTCAAAGCACTCCGACGAGAAAACCAGCAATTCATATGTGAATGGATTTTCAAATGCGAACCCGTCGAAGAAGGAGCACCCGAATGTCCTATGTgcagcgcgaaatttgaaacgcAAAGTTATTTAGAAGAGCACGTGATGACACACACTGACGAGAACTCGCCTGGCTGCGTCGtatgcgattataaatgtccgGCATCCGATGTACTGATAGAGCATATGCTGACGCACACCGAAGACGAAATGCCTTTCCGTTGCGCCGTTTGCGATTTCAAGTGCGGCCGAACCGCGCATTTGAACCGGCACATGTCGACGCACACCGAAGAAAAACCGTTCGGCTGTGATCTCTGCGAATACAAATGCGAACGGGTCGGAATCTTGAACAAGCACATGTtgaaacacaccggcgagaagcgcTTTGCCTGCGACCTCTGCGACTATAAATGTCGACGCGCCGCTCAGTTGAAAGACCACAAATTAAAACACGGCAGCGAGATGTTTAAATGTGACGCTTGCGATTACAAAACCCAACTGAAAACGTGCTTGAAGCAACACATGTATAcgcacacgggcgagaagccgtttcgctgtgatctctgcgattacaagtgccgagCCAGTGGTCCTCTGAAATTGCACAAGTTGAaacacacgggcgagaagccgtttgGTTGTGACCTCTGCGATTTCAAGTGTCGCGAGAAACGAATCATGAAGCAGCACGCGTTggcgcacaccggcgagaaaccctACGCTTGCGAtttttgtgattataaatgccgacgggTCGACGCCTTGAAGCAACACAGGTTGAcacacacgggcgagaagccgCTTGCTTGTGATATTTGCGAGTTTCGGTGCCGAAATCACAGTCACTTGAGGGAGCACAGGTTAAAGCACGGCAAACAGAATTTAACGCAAAACACCGGCGACCGACGATTTAAATGTGACGTTTGCGATTGCAGTTTCAAACTTAAAAAGCACTTGAAGCGACACGTCCTCACGCACACGCAGCCTTTGAgctgtgatctctgcgattacaagtgcGGACGGGTCGAGTGTTTGAAACAGCACAGGAtgacgcacaccggcgagaagcctttcgcttgcgatctttgcgattacaagtgtcggGAGAGAAGGTCTTGGAACCTGCACAAGTTGAAGCACACTGGTGAgaaaccgttcggttgtgaGGTGTGCGATTACAAGTGCGTAGACAAGAAGGGCTTGAAACAGCACATGCtgaaacacaccggcgagaaaccgttcggcTGTctcctttgcgattacaagtgcgcACGCGCGTCGAGCTTGAAGCAACATGAGCTGACgcataccggcgagaaacctTTTGTTTGCGgtctctgcgattacaaatgtcgggAAAGAAGAACTTGGAGGCTGCACGAGTTAAAACACACTGGCGATCGGCCGTCTTGTTGTGCgatttgcgattacaaatgcgtAGACAAGGAAGCCTTGGAACGCCACATGTTAACTCACCCCGGCGAAAAGCCGtacggttgtgatctttgcgattttaaatgccgaCGTCCCGGAAGCTTGAAGAAGCACAAGttgatacacaccggcgagaagcctttTGCTTGCGATGTTTGTggttataaatgccgacaggcCGGAAACTTGAGGACACACAAGTTAACACATCAACGAGAAGctgtttga
- Protein Sequence
- MSQAKDNKVGKVSEEGLFNYCENECRRTFKSETAAERNFECRACGSKFKTRNNLEEHLLIHTGEKPFRCAICDYKCRASRYLKLHVLVHTDEKPFRCDVCDYKCRFSGNLKQHALTHTDEKPFHCTACDYKCRQTTKLKRHMSRHTGEKPFSCDLCDYKCSQAGSLKQHRLRHTGEKPYACNLCEYKCRQADTLKCHKVHGQEKLEATHVKALRRENQQFICEWIFKCEPVEEGAPECPMCSAKFETQSYLEEHVMTHTDENSPGCVVCDYKCPASDVLIEHMLTHTEDEMPFRCAVCDFKCGRTAHLNRHMSTHTEEKPFGCDLCEYKCERVGILNKHMLKHTGEKRFACDLCDYKCRRAAQLKDHKLKHGSEMFKCDACDYKTQLKTCLKQHMYTHTGEKPFRCDLCDYKCRASGPLKLHKLKHTGEKPFGCDLCDFKCREKRIMKQHALAHTGEKPYACDFCDYKCRRVDALKQHRLTHTGEKPLACDICEFRCRNHSHLREHRLKHGKQNLTQNTGDRRFKCDVCDCSFKLKKHLKRHVLTHTQPLSCDLCDYKCGRVECLKQHRMTHTGEKPFACDLCDYKCRERRSWNLHKLKHTGEKPFGCEVCDYKCVDKKGLKQHMLKHTGEKPFGCLLCDYKCARASSLKQHELTHTGEKPFVCGLCDYKCRERRTWRLHELKHTGDRPSCCAICDYKCVDKEALERHMLTHPGEKPYGCDLCDFKCRRPGSLKKHKLIHTGEKPFACDVCGYKCRQAGNLRTHKLTHQREAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -