Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:11603756-11605463[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0054 0.5 12.4 2.6 2 23 19 40 19 40 0.98

2 14 0.017 1.6 10.8 1.5 1 23 46 68 46 68 0.96

3 14 0.0009 0.083 14.8 0.3 1 23 74 96 74 96 0.98

4 14 0.0037 0.34 12.9 0.8 1 23 102 125 102 125 0.98

5 14 0.00027 0.025 16.4 4.8 1 23 131 153 131 153 0.99

6 14 0.0015 0.14 14.1 3.3 1 23 159 181 159 181 0.98

7 14 0.00048 0.044 15.7 3.5 1 23 226 248 226 248 0.98

8 14 7.3e-06 0.00067 21.4 1.8 1 23 254 276 254 276 0.99

9 14 0.057 5.3 9.1 1.5 1 20 282 301 282 304 0.94

10 14 1.8e-06 0.00016 23.3 1.8 1 23 338 360 338 360 0.98

11 14 3.6e-05 0.0033 19.2 1.4 1 23 366 388 366 388 0.99

12 14 0.001 0.095 14.6 1.5 1 23 394 416 394 416 0.96

13 14 7e-05 0.0064 18.3 2.4 1 23 422 444 422 444 0.98

14 14 0.0011 0.1 14.5 1.0 1 18 450 467 450 467 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0054	0.5	12.4	2.6	2	23	19	40	19	40	0.98
2	14	0.017	1.6	10.8	1.5	1	23	46	68	46	68	0.96
3	14	0.0009	0.083	14.8	0.3	1	23	74	96	74	96	0.98
4	14	0.0037	0.34	12.9	0.8	1	23	102	125	102	125	0.98
5	14	0.00027	0.025	16.4	4.8	1	23	131	153	131	153	0.99
6	14	0.0015	0.14	14.1	3.3	1	23	159	181	159	181	0.98
7	14	0.00048	0.044	15.7	3.5	1	23	226	248	226	248	0.98
8	14	7.3e-06	0.00067	21.4	1.8	1	23	254	276	254	276	0.99
9	14	0.057	5.3	9.1	1.5	1	20	282	301	282	304	0.94
10	14	1.8e-06	0.00016	23.3	1.8	1	23	338	360	338	360	0.98
11	14	3.6e-05	0.0033	19.2	1.4	1	23	366	388	366	388	0.99
12	14	0.001	0.095	14.6	1.5	1	23	394	416	394	416	0.96
13	14	7e-05	0.0064	18.3	2.4	1	23	422	444	422	444	0.98
14	14	0.0011	0.1	14.5	1.0	1	18	450	467	450	467	0.96

Sequence Information

Coding Sequence: ATGGAGGCGAAATTTTTCGACGGAAAGCAATCGCGGAAAGCCAAGAGCTTGCGCAGATGTGACGTTTGCGATTACGAGTGTACCAAAGCTTCTCGTTTCAAGGACCACGTGAGgacacacaccggcgagagACCGTTCGCATGTGACGTTTGCGACTTCCGATGCCTGAGGTTATCGAATTTGAAGAGTCACGCTTTAACGCATACCGACGAGAAGCGGTTCGAGTGCGACGCCTGCGATTACAGGGGCAGGACTCGTACGGCTTTAACGCGACACCAGGCGACGCACCGCGGCGCGAAACAGTTCGAATGCGGCGATTGTGATTACAAGAGTTCACTTTATGGTCACGTGAAGCAACACATGTTGACGGCGCACGGAAAGGAGACGCTGTTCAAATGCGACGAGTGTGCTTTCAAATGCAAGAAGAAGAATAACTTAAAGAGACACATGATGGTACATACCGACGACAAGCCGCATCGATGTAATATATGCGAGTACCGTGCCAGAGATCCTAGGCATTTACAAACGCATCTGTTGAAGCACAGCGACGAGAAGCCGTTTGAATGTGATCTTTGCGACTTCAAAACCATTTgGTGTTACTCGGACCATTTCGTTTCTTCGACTGACCTCACGACGCGAACAAAAAAAAGCGCCGGAAAGAGAACTGAAAAAAGCTTCGAATGCGCCCAATGCGATCACAAATGCAACAGCTCCGCTAACCTGACCATACACATGTCgaaacacaccggcgaaaagcTCTTTAAATGCAACGTGTGCGGCTACGAGTGCAGCGTACCTTCGTACTTAAGAAACCACATGCTGAAACACAACGCCGAAAAGCACTTCAAATGcaacctttgcgattacaagagCAACGTGcctaacaattttaaaacgcaCGTGTGGAAGCACACCCACGAGAAGTCGTACAAGTGCGACTTATGTGATTACGAAAGCTGGTGGCCCAATACTTTAAAAAGGCACTCGCTGTCGCATACCGGCGAGAGGCCGTTCAAGTGTAGTATTTGTGGCCACCGCAGCAAGCGCAAGGGGAACCTTAAGGCGCACATGTTGATACACACCGATCAGAAGACGTTCAAATGTAGCTCCTGCGATTACGAGACCAATCGACCCGGCAATTTGAAAAAGCACACGATGACGCATTCCGAAGAAAAACCGTTCAAGTGTGACGTTTGCGAGTTCCGATGCAGGAGGCCAGGGGACTTGAAATCGCACGCGTTGCAACACagcgacgagaagccgttcgaaTGTCAaatctgcgattataaatgtcgctGGCCCGCAAATTTAAGGAAGCACATGAGGAAACACCCCAGGGAGATGCCGTACAAGTGTAATGTCTGCGGGAAAAAATATCAGCATTCGGGGAATTTAAAAAGGCGCCTGTTGAAGCATGGAGAACGAAAAGTCAAGGAGGATCCGAGAGAGAAAGAAACTTTGTAA
Protein Sequence: MEAKFFDGKQSRKAKSLRRCDVCDYECTKASRFKDHVRTHTGERPFACDVCDFRCLRLSNLKSHALTHTDEKRFECDACDYRGRTRTALTRHQATHRGAKQFECGDCDYKSSLYGHVKQHMLTAHGKETLFKCDECAFKCKKKNNLKRHMMVHTDDKPHRCNICEYRARDPRHLQTHLLKHSDEKPFECDLCDFKTIWCYSDHFVSSTDLTTRTKKSAGKRTEKSFECAQCDHKCNSSANLTIHMSKHTGEKLFKCNVCGYECSVPSYLRNHMLKHNAEKHFKCNLCDYKSNVPNNFKTHVWKHTHEKSYKCDLCDYESWWPNTLKRHSLSHTGERPFKCSICGHRSKRKGNLKAHMLIHTDQKTFKCSSCDYETNRPGNLKKHTMTHSEEKPFKCDVCEFRCRRPGDLKSHALQHSDEKPFECQICDYKCRWPANLRKHMRKHPREMPYKCNVCGKKYQHSGNLKRRLLKHGERKVKEDPREKETL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -