Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:2408518-2411208[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.001 0.093 14.6 0.1 2 23 84 105 83 105 0.91

2 17 0.00068 0.063 15.2 5.5 1 23 111 133 111 133 0.98

3 17 0.13 12 8.1 1.1 1 21 139 159 139 161 0.84

4 17 6.3e-05 0.0058 18.4 2.1 1 23 167 190 167 190 0.98

5 17 0.0037 0.34 12.9 3.8 1 23 202 225 202 225 0.94

6 17 9.4 8.7e+02 2.2 3.7 3 23 236 256 235 256 0.85

7 17 3.2e-06 0.00029 22.5 2.9 1 23 262 284 262 284 0.99

8 17 2.7e-06 0.00025 22.7 1.8 1 23 290 312 290 312 0.98

9 17 0.033 3 9.9 0.1 2 23 395 416 394 416 0.88

10 17 0.0078 0.72 11.8 7.6 1 23 422 444 422 444 0.98

11 17 1.1 1e+02 5.1 2.7 1 20 450 469 450 472 0.81

12 17 0.0026 0.24 13.4 0.7 1 23 478 501 478 501 0.97

13 17 7.6e-05 0.007 18.2 2.5 1 23 513 536 513 536 0.95

14 17 0.33 30 6.7 1.5 3 23 547 567 546 567 0.97

15 17 0.0022 0.2 13.6 4.6 1 23 573 595 573 595 0.98

16 17 4.9e-06 0.00045 21.9 1.7 1 23 601 623 601 623 0.98

17 17 0.082 7.6 8.6 0.1 1 21 629 649 629 650 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.001	0.093	14.6	0.1	2	23	84	105	83	105	0.91
2	17	0.00068	0.063	15.2	5.5	1	23	111	133	111	133	0.98
3	17	0.13	12	8.1	1.1	1	21	139	159	139	161	0.84
4	17	6.3e-05	0.0058	18.4	2.1	1	23	167	190	167	190	0.98
5	17	0.0037	0.34	12.9	3.8	1	23	202	225	202	225	0.94
6	17	9.4	8.7e+02	2.2	3.7	3	23	236	256	235	256	0.85
7	17	3.2e-06	0.00029	22.5	2.9	1	23	262	284	262	284	0.99
8	17	2.7e-06	0.00025	22.7	1.8	1	23	290	312	290	312	0.98
9	17	0.033	3	9.9	0.1	2	23	395	416	394	416	0.88
10	17	0.0078	0.72	11.8	7.6	1	23	422	444	422	444	0.98
11	17	1.1	1e+02	5.1	2.7	1	20	450	469	450	472	0.81
12	17	0.0026	0.24	13.4	0.7	1	23	478	501	478	501	0.97
13	17	7.6e-05	0.007	18.2	2.5	1	23	513	536	513	536	0.95
14	17	0.33	30	6.7	1.5	3	23	547	567	546	567	0.97
15	17	0.0022	0.2	13.6	4.6	1	23	573	595	573	595	0.98
16	17	4.9e-06	0.00045	21.9	1.7	1	23	601	623	601	623	0.98
17	17	0.082	7.6	8.6	0.1	1	21	629	649	629	650	0.93

Sequence Information

Coding Sequence: AtgatcattaatttaatttcagtgaTTACTGCAACTGGAGATTATAACAAAAGCagattgACGTTCGAAAGTGCCCTAACACGTACACCTGCGCGCTCAGAGTTGTTCATCAAAGAAGAACCTGACACGTTCTACGCAACGGAAAATCATGCTACGGAGATCAAGGCGAGATTGAAACGGCGATTGAGAAAGCGGAAACGCGTGAAGAAAACTCACGCTTCGGATGTGAACGAGCTCAGTCAAGCGATCGAGTGCGAAATCTGCGACAGAACTTTCAAGGACAACGTAGATTTCGCGTTGCACTCAATCGAGCACAGCACCAACAAAAAATTCACGTGCCACATGTGCGAGTACTCGTGCGTTTCGAAGTACAACTTCACGATGCACATACGCGCGCATGAAGGCAGCACCCAACACAAGTGTGAGATCTGCAACCAGGCTTTCATCACCAGGGCTTTCGCCATCGAGCACAAGTACTTTCACACCGGCGAAACGCCCTTCCAATGCGAAGTCTGCGGCAAAAGTTTCATGTACTCCCGATTTTTATCTTCTCACCGGCGATCGCAACACTGGGAGATCGCAACGGGGACACCCCTGGTCAACTACGACTGCCTCATTTGTAACAAGCACTATAAGACGTCGGCGGGTCTTAAACAACACAAGAAATTCAAACATGATGAGGTACAAGTCGAATCTTCCGTGCTGTGCCACATCTGCGGGAAAGTCCTGTCTTGCATGGAGAGTCTGAAGTTCCACAGCAGGACTCACACGGGCTATAAACCGTACACGTGCAAGTTTTGCAGCAAGTCTTTCACGCGTAGGGAGCAACTTAAGGAGCACGAAAGGGTGCACACGGGAGAGAAACCGTTCGTCTGCAAGTTCTGCGAGAAAGGCTTCACGCAGAGAAGTTCCTTGAAGATACATGAGAGGACTCACACCGGTGAACGGCCGTACGTGTGCAGGTTATGCGGCAAGGGgcCGCTAACACGCAGATTACCAAATTCCGATTTGTTGATTAAAGAAGAGACTAAAGTCACTGCTTGCGCAACGGCCCATCAACAAAACGCAGAGATCAAAGCGATTTTGAGACGAAAGCGAAGGCGTGAATTAAGGCAGCTGAAGCGCCTTAAGCAACTTGACGGTTCTGGTTCGGACAAAGCTGGTGATGTCAGCCAAGCGATCGAGTGCGAAATTTGCGTTAAAACTTTCAAAAACAACATGGATTTCGGGTTGCACTCAATTGAGCACAGCGCCGATAAAAAATTTTCCTGCCACATGTGCAAGTTCGCGTGCGTCACGAAATCCCACTTCACGATGCACATCCGCGCGCATGAAGGCAACACTCAACATAAGTGCGAGATTTGTAAGCAGGCTTTCGTCAAGAAGACTTTCGCACTCGAGCACAAGTACTttcacaccggcgagaaaccgttcgtGTGTGAAGTTTGCGGTAAAAAATTCATGTACTCCCGAATTTTGGCGTCCCACAGGCGGTCGCAGCATTGGGAGATTGTGACCGGCACGCCTTTCGTTAAGTACGACTGCCCCACTTGCAATAAACATTACAGGAGCGCATCGGGTTTGAAGCGTCACAAAATTAGTAAACACGATGACGTAGACGTTGAGGCTTCTGTGTTGTGCGACATTTGCGGGAAAAGGCTGTCGTGCGGGGAGACTCTGAAATTACACAGGAGGATTCACACAGGTTATAAACCGTACACGTGCAAGTTTTGCAGCAAGTCCTTCACGCATAGGGAGCGAGTTAAGGAACACGAAAGGGTTCACACGGGAGAAAAACCGTTCATCTGCAAGTTCTGCGAGAAAGGCTTTACACAGAGAAGTTCCTTGAGGATACATGAGAGGACCCACACCGGTGAACGGCCTTACATGTGCAGATTATGCGGCAAGGGGTACATTTCTAAAGGTGTCATGGATGTACACATGAAAAACTGCCGAGGCAGATAA
Protein Sequence: MIINLISVITATGDYNKSRLTFESALTRTPARSELFIKEEPDTFYATENHATEIKARLKRRLRKRKRVKKTHASDVNELSQAIECEICDRTFKDNVDFALHSIEHSTNKKFTCHMCEYSCVSKYNFTMHIRAHEGSTQHKCEICNQAFITRAFAIEHKYFHTGETPFQCEVCGKSFMYSRFLSSHRRSQHWEIATGTPLVNYDCLICNKHYKTSAGLKQHKKFKHDEVQVESSVLCHICGKVLSCMESLKFHSRTHTGYKPYTCKFCSKSFTRREQLKEHERVHTGEKPFVCKFCEKGFTQRSSLKIHERTHTGERPYVCRLCGKGPLTRRLPNSDLLIKEETKVTACATAHQQNAEIKAILRRKRRRELRQLKRLKQLDGSGSDKAGDVSQAIECEICVKTFKNNMDFGLHSIEHSADKKFSCHMCKFACVTKSHFTMHIRAHEGNTQHKCEICKQAFVKKTFALEHKYFHTGEKPFVCEVCGKKFMYSRILASHRRSQHWEIVTGTPFVKYDCPTCNKHYRSASGLKRHKISKHDDVDVEASVLCDICGKRLSCGETLKLHRRIHTGYKPYTCKFCSKSFTHRERVKEHERVHTGEKPFICKFCEKGFTQRSSLRIHERTHTGERPYMCRLCGKGYISKGVMDVHMKNCRGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -