Dpar030385.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284480.1:29509233-29511076[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00081 0.075 14.9 0.8 1 23 153 176 153 176 0.96 2 13 2.1e-05 0.0019 20.0 1.9 1 23 182 205 182 205 0.97 3 13 0.019 1.7 10.6 0.2 2 23 214 236 213 236 0.93 4 13 0.64 59 5.8 0.4 1 14 250 263 250 270 0.84 5 13 2.2e-05 0.002 19.9 0.4 2 23 331 353 330 353 0.96 6 13 7.2e-05 0.0067 18.2 0.8 1 23 359 381 359 381 0.96 7 13 0.00036 0.033 16.1 1.8 1 23 387 409 387 409 0.96 8 13 3.7e-05 0.0034 19.2 1.1 1 20 415 434 415 435 0.96 9 13 0.00062 0.057 15.3 1.7 1 23 446 468 446 468 0.99 10 13 0.0013 0.12 14.3 2.8 1 23 474 496 474 496 0.97 11 13 0.0012 0.11 14.5 1.1 1 23 502 525 502 525 0.97 12 13 7.4e-05 0.0068 18.2 3.4 1 23 539 561 539 561 0.98 13 13 1.3e-05 0.0012 20.6 2.2 1 23 567 590 567 590 0.97
Sequence Information
- Coding Sequence
- ATGTCGCAAAACACAGAAACATGCAGCACATGCCTCAAAAACCACGAGAAACTGGTAAACGCCGAAGAACTCGGTCAAGACAACATAAAATGGAGCTCGAAACTATCGTTTTGTGTGCCGGAATTGGAATGGAAAGGCGACTGTTTGCTCTGCCAAACGTGCACGCACAAGCTACAAATCGTCTACGAATTTCGAAATCTCTGCCTGCGCTCCTACGAAATCCAGACTAAGTACCGGGAATATATAAAGAACGAAAGCGATTTAGAGGCGGACAGAGATGGCTATTCGTTGGATGTGAATGACTGCGATGATGAATCTGACGTAAAGAGGGAAAATTCCGACGCCTTTTGCATTTCGCTTGAAGAAATTAACTCGTTGTTTAGAGTGAAGGACGATCTGTGTAATTCAGTGCTAAATAAAAAGTTCAAGACGAGTAAACTACGCGATGTGAAAACCTTCCAGTGTAAGATCTGCAATCAAGTGTTGGACAGCCGCCGAAATCTCTATATGCACATTAAAGACAACCATGACACTAGCGAAAGCTTCACGTGTTTTCACTGCAATGAAAGTTTCTCGGATAAATTAAATCTAGCCAGTCACATTCAGAGTTTACATGGAAATCTCAAGAGCGAAACGCAGGAGTGCCAGATCTGCAAGAATAAATTCGAAGATCAAGCCAGGCTGGAAAACCATCTGATACTCGAGCATAGAATTGGGGAAACGAAGTCGACACGAAAGGCAAAAAAGCACAAGTGCTCAAAATGCTCGCGGATGTATACGACAGAAAAAATCATGAAAATCCACAGTTTAAGTTGTGACGGTATTAAGAGACACGCCAAGGATGGCcttaaaagtgaaataaaattgtttgacTTGGCTGtgaaggaagaagaaaatatcGAGGTGTTGTTAAAGAATGAAATGAATGAGGTAAAATTCGAAAGGCCAAAATTGAAACGAGGTAGAAAACCGAAAGagaaacagataaacaaatgtGAAATCTGTAGTGTGGTTTTCTCAACGCGTTATTTATTGAACAGACATGTACGGAATGTACATGCAACTGAGAAGCTGCATAACTGCGACATTTGTGGACAAAAGTTCGCAAGCCCGGTTTATCTGTCTGCACATAAACGATATCATTCCAGAGAGAGACCCCACATCTGCTCGTTCTGCGGGAAAGGTTACATTACTGCCAGCGACCTCTACCACCATGAAAAAATTCACGCTAACAAGCGAGCATATAAATGTGCCAAATGCCCCAAAGCTTTTAATACCTCGTCTGACCTCCATAAGCATAAGATCTGCGTCCACGTTGATCGGAGTGAATGGAAGTACGTGTGCTCATTCTGTGAAAGGCGGTTTCCTTTAAAAACAAACTTAGACACTCACACGAAAACACATACCGGTGAGCGTAATTTCGCTTGCCACCTATGTGACAGGCGCTGCATAAATCGTTCTGTGCTGTTGCGCCATATCGAATCTCACTCGAACGTCCGCTCGTTTCGCTGTAGTGTCTGCAATCAAGACTACAAATACCAGAAGTCACTCGACATACACATGACTAAAGCGCATGGGATCGGGGACGCGAAGATCCCCGAGCGCATCAAAAAGTACTTCTGTCACATCTGCCCTAAATCGTACTTCGCCAACAATAAACTCCAGAAGCACATACGAACGCATACTGGGGAGAGACCGTTCGCCTGTCACCTCTGCGATAAACGCTTCATCGACAAATCGTACGTCAAACAACACCTGAAAACTGCTCATAATATTAGTTCCGTTTCGTCGTAG
- Protein Sequence
- MSQNTETCSTCLKNHEKLVNAEELGQDNIKWSSKLSFCVPELEWKGDCLLCQTCTHKLQIVYEFRNLCLRSYEIQTKYREYIKNESDLEADRDGYSLDVNDCDDESDVKRENSDAFCISLEEINSLFRVKDDLCNSVLNKKFKTSKLRDVKTFQCKICNQVLDSRRNLYMHIKDNHDTSESFTCFHCNESFSDKLNLASHIQSLHGNLKSETQECQICKNKFEDQARLENHLILEHRIGETKSTRKAKKHKCSKCSRMYTTEKIMKIHSLSCDGIKRHAKDGLKSEIKLFDLAVKEEENIEVLLKNEMNEVKFERPKLKRGRKPKEKQINKCEICSVVFSTRYLLNRHVRNVHATEKLHNCDICGQKFASPVYLSAHKRYHSRERPHICSFCGKGYITASDLYHHEKIHANKRAYKCAKCPKAFNTSSDLHKHKICVHVDRSEWKYVCSFCERRFPLKTNLDTHTKTHTGERNFACHLCDRRCINRSVLLRHIESHSNVRSFRCSVCNQDYKYQKSLDIHMTKAHGIGDAKIPERIKKYFCHICPKSYFANNKLQKHIRTHTGERPFACHLCDKRFIDKSYVKQHLKTAHNISSVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465252;
- 90% Identity
- iTF_00465252;
- 80% Identity
- -