Dpar000419.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:1728104-1730423[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.6 3.4e+02 3.4 3.5 3 20 59 77 57 79 0.83 2 15 0.00017 0.016 17.1 0.4 1 23 100 122 100 122 0.98 3 15 0.00055 0.05 15.5 3.4 1 23 128 150 128 150 0.96 4 15 6.1e-05 0.0057 18.5 1.0 1 23 156 178 156 178 0.95 5 15 0.00016 0.014 17.2 2.9 2 23 185 206 184 206 0.96 6 15 0.00043 0.04 15.8 2.1 1 23 212 234 212 234 0.99 7 15 0.0024 0.22 13.5 5.7 1 23 240 262 240 262 0.98 8 15 0.00013 0.012 17.5 4.6 1 23 268 290 268 290 0.99 9 15 5e-05 0.0046 18.8 2.5 1 23 314 336 314 336 0.98 10 15 0.00013 0.012 17.5 7.5 1 23 342 364 342 364 0.98 11 15 0.00012 0.011 17.5 2.0 1 23 370 392 370 392 0.99 12 15 0.0002 0.018 16.9 3.6 1 23 398 420 398 420 0.99 13 15 0.0033 0.3 13.0 3.1 2 23 427 448 426 448 0.97 14 15 0.81 75 5.5 6.1 1 23 454 476 454 476 0.97 15 15 0.00023 0.021 16.7 2.2 1 23 488 510 488 510 0.97
Sequence Information
- Coding Sequence
- ATGTCggatttttccttttatataagaatattGACGTACATCCACCAAGAAGCCCCATTTTCATCTACCGCTGGACCTAACCTCAAAACTGAACCTATCACAATACATACCGGTGAAAATCCACTTGCGTCCAGCGACTTTAATTCTTCAAAGACGCCCAAAAAGTGGCTTAAATGCGACATTTGCTGCGAATACAAATGCACACGTTCCGATCAGTTGAAGGAACACACGCTACAGTGTGAATATAATCAAAGCGAAAGCATCCGCGCTCATTCCGAGACTCAAGCTGACAGACCGTTCGAATGCACCTCCTGCGATTACGCGGCCAAAACCAAATCGGATTTAAATAAACACGCGCTGACGCACGCCAGTGAGAAACCGCACGCTTGCAAAGTTTGCGGTTACAAGTGCAAGCTGAAAGTAAACTTAACGAGGCACCTGTTGAttcacaccgacgagaaaccgttcgtGTGCACCGTCTGCCAACACGGATTTCGCGATTCCGGCAACTTAAAAAAGCACTCGGCGATACACAGCGCTGAGAAACGATTGAACTGTAACTTATGCGATTACAAATGTAATCAGCCCGAGTACTTAAAGAAACACATGACGACGCACAGCGACGAGAAACTATTTAAGTGTAACATCTGCGGATATAAATCCAATCGGCATTTACTATTGGAGAGGCACGTCTTAAcgcacacgggcgagaagccgtttaaaTGCAAGTATTGTGATTTCCGATGCAGTCTGtctagaaatttaaaaacgcacGAACTAACACACGCGCTCGAGAAACCGTACAAGTGTGACTTTTGCGATTATAGGTGTTGCCGAAGCGATGCCTTAAAGGCTCACTTGATCACCCACACGAGCAAGAGCATCCCACCCGAAACAATCAAATCCGAACCGCCGCCGCCTACTGTAGAAGTGAAACCGTTCAGGTGCGGACACTGTGGTTACGCTTGCGCAAACTCGAGCAGGCTGAAAGCGCATTTGTTGACGCACAGCGTTGAGAAGACCTTCGAATGCGAGcattgcgattacaagtgcagCTTCGCCAAGTACTTGAAGAGACACATGAGGAAGCACACCGGTGAAAAACCGTTCAAGTGCGATCGTTGCGACTACAGCGCCAGCCAATCTTACAGATTGAAGACGCATATGATgacgcacaccggcgaaaagcccTACAAGTGCAGCGTTTGCGATTCTAGGTTTAGACACTCGGACGTCCTGAAGAAACACACACTGACGCACGCCAGTGAGAAATCGTTGAAGTGTAAgctctgcgattacaaatgcggCACGTCGAAATTATTGAAGTTGCATTTGTTGACGCACGCCGATGGCAAACCCTTTACGTGTGATTACTGTCGGTACAAGTGCGATCAGTTTCATGTTTTGAAGGAGCACTTGCAGTTGCATAAAGATGAGGTATTGTATACAGAAGAGAAAACTTTTCATTGTGaaatttgcgattataagtgttCTCAATCTGGTGAACTGGATCAACACATGCTAATTCATGGAGATGTTAAGCCAAAGATTGAATCTGTTGATTAA
- Protein Sequence
- MSDFSFYIRILTYIHQEAPFSSTAGPNLKTEPITIHTGENPLASSDFNSSKTPKKWLKCDICCEYKCTRSDQLKEHTLQCEYNQSESIRAHSETQADRPFECTSCDYAAKTKSDLNKHALTHASEKPHACKVCGYKCKLKVNLTRHLLIHTDEKPFVCTVCQHGFRDSGNLKKHSAIHSAEKRLNCNLCDYKCNQPEYLKKHMTTHSDEKLFKCNICGYKSNRHLLLERHVLTHTGEKPFKCKYCDFRCSLSRNLKTHELTHALEKPYKCDFCDYRCCRSDALKAHLITHTSKSIPPETIKSEPPPPTVEVKPFRCGHCGYACANSSRLKAHLLTHSVEKTFECEHCDYKCSFAKYLKRHMRKHTGEKPFKCDRCDYSASQSYRLKTHMMTHTGEKPYKCSVCDSRFRHSDVLKKHTLTHASEKSLKCKLCDYKCGTSKLLKLHLLTHADGKPFTCDYCRYKCDQFHVLKEHLQLHKDEVLYTEEKTFHCEICDYKCSQSGELDQHMLIHGDVKPKIESVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465242;
- 90% Identity
- iTF_00465242;
- 80% Identity
- -