Dpar000500.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:2535014-2536926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00026 0.024 16.5 0.8 1 23 319 341 319 341 0.96 2 10 0.0013 0.12 14.3 3.8 1 23 346 368 346 368 0.97 3 10 0.00027 0.025 16.4 2.4 1 20 374 393 374 395 0.93 4 10 5.1e-06 0.00047 21.9 1.0 1 23 403 426 403 426 0.97 5 10 0.0013 0.12 14.3 3.1 1 23 431 453 431 453 0.98 6 10 0.00026 0.024 16.5 1.3 2 23 463 485 462 485 0.95 7 10 1.6e-05 0.0015 20.3 0.6 1 23 490 512 490 512 0.98 8 10 1.2e-06 0.00011 23.9 0.0 1 23 518 540 518 540 0.98 9 10 0.00016 0.015 17.2 0.1 1 23 546 569 546 569 0.96 10 10 1.1e-05 0.00097 20.9 1.6 1 23 575 597 575 597 0.98
Sequence Information
- Coding Sequence
- aTGCTTCTTCATACGCGTAGATTATGTAGGCCGATTAACAGAAAGTCCGCGGTGAAATACTACAAGGTTCTACTTAAGTCCGTGAACCAAGTGACCAAGAAGGTGGTGGAACAAACGTACCTTATACCGGAGTCCTCTTTAAGCCAAGATATACGCAAGAGATTCCGGGGAAGGGAAGAATCCAATCCGAAGGCACAAACTCAACCTTTTATTCCGAATGTAGCTCTGGGCCAACACTTAAAATCGACGTTGCTGGCGAGCCTGAAGGATAAAGCTCTGACATCCCGTCAGTCGCAAAATCTAATAATAATGGGCGCCACGAGCAGGGATAACGCGCAGAACCAACAGAATGTTATTGCAAGTCGGAACAACACCCAAAGTCTTTTAATTCGGAAGTTTCCTTCACTTCGACAGTTCCAAGGGGGTAACGTCGGTTCGGTTCGGAGCAATCCGCAAGCTCAGAAATTACCTGCAAGTCAACATTTCCAAGAGGCACTGCGGAGAACCCAAAAAGTTAATTTGAATAGTTTGACGTGCTATCCAAAGAAGATCCAGGGTGTCACCAGCGGAAGTACCATGCTACTTGTCAATCAAAATCAACTATATAATGTGGGGGTTCAGAAGAAATCGCCAATTCCGGCGTATCTACCCCCAAATCAAAATTTGGTACTGCGTCGTGATTCCGAAGATAAGTTGAGAACTTTGACGTCCTCTGGGACGCCACTAGCCAACTTGAAAACACAAAATGGGGGCAACTCACAAACTTTGATTTACAACCAACCGATCATAAAGAAGATAATCCTAAACCCAACGTTCTTGCAGTCTAATTCCGCACAGAATGTTACCTTGGTACCGTTAATGTCCGGATCTGACTTACACCAAAGCGACCTGCCAAGTTTTCCCAAAATCAAGTTAATACCTAATAGTGGAGTGGTTCATTCCTTGCCTGAAGCGTTCAGGTGTAAAATTTGCTCCCTAAGCTTCGAGACTCGCGGTAAGTTGAGAGGCCACATGTACGCACATAAGAAAAGGACACACAAGTGCGATAAGTGTGGGAAATCCTTCCACGTGTTGAGTCGCCTGAATGTCCACAAGTTAATCCACACGGACGATCAGAAGTTTCCTTGCGACGTATGCGGGAAAATGTACAAGTCGAAGCATTCGTTGAAGATTCACTCGTGCAGCAACATCATCCTGGAGAAGAATTTTAACTGTGAGGTGTGCGGCAAGAAATTCTACAGAGAGCAACAGCTTAAAAACCACGTCAACACGGAGCACCTGAACATGAAATACAAATGCGACGTTTGCAAAAAGGAATACCGTCAGATCTTCACGTTGAAAATGCACAAGCGGCAACACGACCCCCATTTCGAAGCCATGTCGTTAAAATGTGACCAGTGCGATGCGAAATTCACGTACAAGACCGCTCTGAGGAAGCACAAGTTGAGGGTGCACGTGGGTAAGCTGTACATGTGCGACATTTGCGGTAAGGAGATAACTTCCTCGACCAGTTTCCAAAGTCACCTGAGGACTCACACCGGCGAAAAACCGTTCGTGTGCGAAATTTGCGGCAAAGCGTTCGCTTCAAAGCCGTTACTGAGAATACACGTTCGCATACATACTAAAGAGAAACCGTATCCGTGCAAGTTATGCGGCAAGAGATTTTCGCAGGTGGGTTCGGTGACGATTCATGTATTGAGAGTTCACCGACGCGAAAAGCAATTTCAATGCAACatctgcaataaaaagtatGTGTCCAAAGTTCAGTTGAAGGTCCACACGAAATTACACGGCATTCCTTTATCTGAGCTGGGAACTGATAGGGAAGTTGAAAAACCATCTAAACGCTAA
- Protein Sequence
- MLLHTRRLCRPINRKSAVKYYKVLLKSVNQVTKKVVEQTYLIPESSLSQDIRKRFRGREESNPKAQTQPFIPNVALGQHLKSTLLASLKDKALTSRQSQNLIIMGATSRDNAQNQQNVIASRNNTQSLLIRKFPSLRQFQGGNVGSVRSNPQAQKLPASQHFQEALRRTQKVNLNSLTCYPKKIQGVTSGSTMLLVNQNQLYNVGVQKKSPIPAYLPPNQNLVLRRDSEDKLRTLTSSGTPLANLKTQNGGNSQTLIYNQPIIKKIILNPTFLQSNSAQNVTLVPLMSGSDLHQSDLPSFPKIKLIPNSGVVHSLPEAFRCKICSLSFETRGKLRGHMYAHKKRTHKCDKCGKSFHVLSRLNVHKLIHTDDQKFPCDVCGKMYKSKHSLKIHSCSNIILEKNFNCEVCGKKFYREQQLKNHVNTEHLNMKYKCDVCKKEYRQIFTLKMHKRQHDPHFEAMSLKCDQCDAKFTYKTALRKHKLRVHVGKLYMCDICGKEITSSTSFQSHLRTHTGEKPFVCEICGKAFASKPLLRIHVRIHTKEKPYPCKLCGKRFSQVGSVTIHVLRVHRREKQFQCNICNKKYVSKVQLKVHTKLHGIPLSELGTDREVEKPSKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -