Dpar010538.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- Sall1
- Assembly
- GCA_958336345.1
- Location
- OY284476.1:40306982-40308980[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0039 0.36 12.8 0.9 2 23 149 171 148 171 0.95 2 12 0.015 1.4 11.0 0.3 1 23 178 199 178 199 0.96 3 12 0.00017 0.015 17.1 1.0 1 23 205 227 205 227 0.97 4 12 4.2e-06 0.00039 22.1 4.9 1 23 233 255 233 255 0.98 5 12 0.02 1.9 10.5 3.7 3 20 263 280 262 282 0.94 6 12 0.00031 0.028 16.3 4.4 1 23 290 312 290 312 0.98 7 12 1.3e-05 0.0012 20.6 0.8 3 23 323 343 321 343 0.98 8 12 7.1e-05 0.0065 18.3 1.1 1 23 348 370 348 370 0.96 9 12 0.019 1.7 10.7 4.9 1 23 376 398 376 398 0.97 10 12 4.8e-05 0.0044 18.8 3.9 1 23 404 426 404 426 0.99 11 12 7.2e-06 0.00066 21.4 1.3 1 23 432 454 432 454 0.99 12 12 8.3e-06 0.00076 21.2 0.6 1 22 460 481 460 484 0.91
Sequence Information
- Coding Sequence
- ATGATGCCAAAAGACATATGTGATACTTGCATCACGGAACTTATAAATTGTTACCAATTCAAGAAAAAGTGTCTTCAGTCGCAATCTACtttagaaaaaatcataaaatattcCGTTACAAGGCAAGGTTCTTGTTGGAATGATACTAAGGCACAAACACCATTTATATTACATAATTGCGAATACATTAAATTTCTTATTGAAGATGAAACTGAAGAgcaaaaaattacacaaatagAAAACTGTAGAGAGGAAGAACCTGTCTcgaatttgaatgaaaaattaaatggatCAAGTGTGATTgcagaaaatgaagaaatagtaCAAAATAACGAAGAAGGAAGTTATGATATAAACTTACTTCCTACTGACCTAAACGCATCTAACTTTGAAAACGAAGAAGTGAAAGATGCGAACAAACAAATCAAGTACAAGTTGCCTTTAAGTTGTTCTAAATGCGGTGACAATTTTCAAACCTTGGAGGAACTTCAAAAGCACCGCAAAGTAAGGCATCCTAGTATTGCAAGAAAATTTGCATGTCAAGTATGCGGAAAATTGTATGCACGTAATCAATTGGAATTGCACCTGCGCACACATACAAAAGAGAAACCATTTGAATGCAGAGTATGTTCTAGAGCATTCAgcttgaaaatgaatttaaatcgACATTTCATGATACATACTGGAGAAAGACCTCATGTGTGTCATATTTGTGGTAAagGTTTCATACAATCTCAGAGTTTACGAGATCACATGTGCACTCATACTGGACAGAAGCCGATTTTATGTGATGTTTGTGGTAAAGGGTTCTCTCACAGTCATAGTTTCAGCGAGCACAAATGCGATCAACCTTCTTCCGGTAGAACATACAAATGCAGTTACTGTGGTACGATATTCAGTCAATATTCAGAGCATCGTAAGCATATGCAGCAACATCGGATAGATCAACAGTTAAAGAAATTTTGGTGCGATGTATGTCAAAAAGTATTCAATAcgagaaaaacattaaatacacaTATGCTAATTCACGGTGAAAAAACTTACTTATGCAGTGACTGTGGTAATGGATTTCACACTCAATCAGGATTACTGTCTCACATGAAAATGCACACTGGAGTAAAGCCGCATTCATGTTCAGAATGTGGCAACCgttttttgcatttttcaaccCTAAAGACACATATGTTGATGCACACTGGCGAAAGACCTTATACTTGCGAAATTTGCTTAAGAACGTTTGTGCAGAAGACACACCTAAATTATCATTTAAAGAGGCATTATGGAGACACACCTTATAAGTGTTCATATTGCAACAAAAGCTATGCCTTGAAAGGAACACTGAGAGTTCACACTCGAATTCACACTGGTGAAACCCCCTACATTTGTGATGTATGTGGACGGAAATTTAATGATTCAACTAGCTTGAAGAAACATAAAAGAGCACAAGGTCATATTATAGACATTGTTGATGAAACAAGTTCAGTGAAATCTAATTag
- Protein Sequence
- MMPKDICDTCITELINCYQFKKKCLQSQSTLEKIIKYSVTRQGSCWNDTKAQTPFILHNCEYIKFLIEDETEEQKITQIENCREEEPVSNLNEKLNGSSVIAENEEIVQNNEEGSYDINLLPTDLNASNFENEEVKDANKQIKYKLPLSCSKCGDNFQTLEELQKHRKVRHPSIARKFACQVCGKLYARNQLELHLRTHTKEKPFECRVCSRAFSLKMNLNRHFMIHTGERPHVCHICGKGFIQSQSLRDHMCTHTGQKPILCDVCGKGFSHSHSFSEHKCDQPSSGRTYKCSYCGTIFSQYSEHRKHMQQHRIDQQLKKFWCDVCQKVFNTRKTLNTHMLIHGEKTYLCSDCGNGFHTQSGLLSHMKMHTGVKPHSCSECGNRFLHFSTLKTHMLMHTGERPYTCEICLRTFVQKTHLNYHLKRHYGDTPYKCSYCNKSYALKGTLRVHTRIHTGETPYICDVCGRKFNDSTSLKKHKRAQGHIIDIVDETSSVKSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -