Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284481.1:31082102-31087852[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.8 4.4e+02 3.1 0.6 2 21 164 183 163 184 0.90

2 12 0.38 35 6.5 4.5 1 23 188 210 188 210 0.94

3 12 0.00039 0.036 15.9 1.0 1 23 218 240 218 240 0.94

4 12 2.6e-05 0.0024 19.6 1.7 1 23 246 268 246 268 0.99

5 12 0.00022 0.021 16.7 5.5 1 23 277 299 277 299 0.97

6 12 3e-06 0.00028 22.6 1.8 1 23 305 327 305 327 0.97

7 12 0.00023 0.021 16.6 1.5 1 23 333 355 333 355 0.97

8 12 2.6e-05 0.0024 19.6 3.3 1 21 361 381 361 384 0.96

9 12 6.9e-05 0.0064 18.3 0.3 1 23 390 412 390 412 0.94

10 12 3.3e-07 3e-05 25.6 2.4 1 23 420 442 420 442 0.97

11 12 6e-06 0.00056 21.6 0.3 1 23 448 470 448 470 0.97

12 12 1.9e-06 0.00018 23.2 5.2 1 23 476 498 476 498 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.8	4.4e+02	3.1	0.6	2	21	164	183	163	184	0.90
2	12	0.38	35	6.5	4.5	1	23	188	210	188	210	0.94
3	12	0.00039	0.036	15.9	1.0	1	23	218	240	218	240	0.94
4	12	2.6e-05	0.0024	19.6	1.7	1	23	246	268	246	268	0.99
5	12	0.00022	0.021	16.7	5.5	1	23	277	299	277	299	0.97
6	12	3e-06	0.00028	22.6	1.8	1	23	305	327	305	327	0.97
7	12	0.00023	0.021	16.6	1.5	1	23	333	355	333	355	0.97
8	12	2.6e-05	0.0024	19.6	3.3	1	21	361	381	361	384	0.96
9	12	6.9e-05	0.0064	18.3	0.3	1	23	390	412	390	412	0.94
10	12	3.3e-07	3e-05	25.6	2.4	1	23	420	442	420	442	0.97
11	12	6e-06	0.00056	21.6	0.3	1	23	448	470	448	470	0.97
12	12	1.9e-06	0.00018	23.2	5.2	1	23	476	498	476	498	0.98

Sequence Information

Coding Sequence: ATGACGAAAGTATGTAGActctgtttaaaaataacggaAGAATCGTACTACTTGATTGATGACACCGACACAGtgagaaatagaaataaaattgtgaCTTTAATGCCGGAACTGGAACTTGATATTGTGGTCGCACCTGTTATTTGCTCGTTATGTTATGGTGTGTTACATGTCGCATATGAATTCAAGTGCAATTGCCTAGCAAACGAATTAAAAATCACCGAGTACTTGAAGAGTAGCAAAATTCCACAGGTAAACTTGTACGATCTATTGAAACAGAATGACTCCAAAGCAAGTGAGGATTATGAAGCAACCGCAAATATGTTGGATTTAgttaagaaagaaaacaaattcaaGCCAGAACTGTTGGAAGATTTAAAAGAGTTTGATAGTATACATGAAGATTCATTTAAAGTTACAAGCCCTAAGGCAGAAGAAAAAGAGAGGGATATATTGGATAAAAATGATGAAGCCCTAATCAAGAATATTAAGTGTACAAAGTGCTCCAATGAATTTATGATTATGAAAGAATATAgaaaacatttgttaaaatGTGCCCCCTACAAATGTGATATTTGCAGCAAGAAATTTATGTTAGAAACCAGGTTTCATCAGCATAAGTTATCGCATAACGCAGGtacagaaaaaatatttttatgtgaaGTGTGCAGTAAAACTTTCCAGAAAGCGTACTATTTAAAGCAGCACCTCTTATTGCATTCTGGCCGGAGACCTTATCAGTGCCTCCTATGCGAGAAGGCATTCGCTACAAGGAATCACTTGGCGATGCATCGACGATCCCATTCGAATGAATGCAGGGAGAAGATTCATTCATGTGAAACATGCAAAAAGAAATTCTACACGCTTACCATGCTGCGAAAGCATTTGAATACTCACtcgcaagaaaaaaaattcttctgcaAGATTTGTGATAAAGGTTTTAATATTAAGGATTATTTGCAGCAGCATATGAAGACGCACACTGGAGAAAAACCATTCATATGCAACATTTGCAATTTGCGTTGTGCATCGAAAAGTAATTTGGTAGAACATAATCGCAGTCACACTGGTGAAAGACCGTACAAATGTAAGCTGTGTGAAAAGAGCTTTGCACAAAGCAGCACTTTAAGTATGCACATGCGTTGCTTGCACTCAAATGAAAAGCCCTACAGTTGTgagGTGTGTGGAAGAAGATTTAATTTGAAAGGCAACTTACGCTCACACTCGGTTGTTCACATGGAGAATGTCGAGAAAAAATTCGCCTGTCCTCACTGTGACAAAACTTTCCGAATAAACAAGGACCTAAACAGACACATCAGGAGGCACACGGGAGAACCAACTCACATATGCACCGTGTGCGGCAAAGGTTTCATAGGATCTAATGCGTTAAAAATACATATGAGGAGCCACACTGGGGAGAAGCCTTTCGAATGTGAGATCTGTCATAAGAAATGTAGTCAAAAATACAACTTGCAGGTGCACATGAAAGTACACGCAAAGgtttcatga
Protein Sequence: MTKVCRLCLKITEESYYLIDDTDTVRNRNKIVTLMPELELDIVVAPVICSLCYGVLHVAYEFKCNCLANELKITEYLKSSKIPQVNLYDLLKQNDSKASEDYEATANMLDLVKKENKFKPELLEDLKEFDSIHEDSFKVTSPKAEEKERDILDKNDEALIKNIKCTKCSNEFMIMKEYRKHLLKCAPYKCDICSKKFMLETRFHQHKLSHNAGTEKIFLCEVCSKTFQKAYYLKQHLLLHSGRRPYQCLLCEKAFATRNHLAMHRRSHSNECREKIHSCETCKKKFYTLTMLRKHLNTHSQEKKFFCKICDKGFNIKDYLQQHMKTHTGEKPFICNICNLRCASKSNLVEHNRSHTGERPYKCKLCEKSFAQSSTLSMHMRCLHSNEKPYSCEVCGRRFNLKGNLRSHSVVHMENVEKKFACPHCDKTFRINKDLNRHIRRHTGEPTHICTVCGKGFIGSNALKIHMRSHTGEKPFECEICHKKCSQKYNLQVHMKVHAKVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258373;
90% Identity: -
80% Identity: -