Dpar034584.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284481.1:31185219-31188668[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.024 2.2 10.3 3.3 1 23 178 200 178 200 0.97 2 12 7e-06 0.00065 21.4 4.0 2 23 205 226 204 226 0.97 3 12 0.00031 0.028 16.3 1.4 2 23 231 252 231 252 0.97 4 12 3.5e-06 0.00032 22.4 1.7 3 23 259 280 258 280 0.93 5 12 0.16 15 7.7 3.5 1 23 289 311 289 311 0.90 6 12 2.2e-05 0.002 19.9 2.6 1 23 317 339 317 339 0.97 7 12 7.2e-07 6.7e-05 24.5 1.5 1 23 345 367 345 367 0.98 8 12 4e-07 3.7e-05 25.3 2.0 1 23 373 396 373 396 0.98 9 12 0.0032 0.29 13.1 0.5 1 23 402 424 402 424 0.97 10 12 1.7e-05 0.0016 20.2 0.9 1 23 432 454 432 454 0.97 11 12 0.00014 0.013 17.4 1.0 1 23 460 482 460 482 0.94 12 12 0.00033 0.03 16.2 8.3 1 23 488 510 488 510 0.98
Sequence Information
- Coding Sequence
- ATGATCATTGACATTGTGGACGACCCTCAGATATGTGTAATTTGCTCAAAGCTGCTCGAGAAGTTTTATGATTTCAGACTCGTTTGTTTGAATACTGAGAAAAGAATTAGATGTTTTATTGAAGAAGGCCATCATGATCTACCCGTAGATTTAAAGCTACTTATCCAAGAAAACTGTCCGGGTGTTGAGCCAGAAGCAGGAATAGTTAAATTGAAAGAAGAGAATGTTGAACAAGAAGTACAATTAGATCACTTGCAAGAATACTTGAATATAACTGCACAAGAAGTGTATTTGATAGACAGTACAGATAAGGAGAAAGTTATTGATGCTGAAAATGTGAACGAAATCATTAATCAGTCTAATCATTTGCTTGACGCTGaTAAAGTCATCAAATCAGAAGACATGATAGACAGAAATGAGAACTGCCAAGAAGTAGATTTCAAAGAACAATCAGAATTATGTGAATTAAAACGTAATGAGTATAAAATACTGCAAGTGGAAGACATCAGAAATAAAACCGCTTTGCCAAAACATACCTGTCAGTTTTGTAAGATAAGATTTGTAAATAAACTGTCGTACCTGAAACACGTTCAAGTCCACAGTGATAATCTGAAGTGCGATGTATGCTCGAAAACTTTCTGCAAAAACTGGGAGCTCAAGCGACACATGAAATCACATGCAAAGTCTCGCCAGTGTGATTTATGTAACGAGAGTTTCGTTGATCACAAATCACTGAGGCAACACCGTGCAGTCCACGCAAAACAACCGGCCATATGTGTGATTTGCGATAAAACTTTCTCCACACAAAGTCACCTCAAAACACATCTAACAAACATACATGCCGCTAACATTACGAAGCGAAAATTTGAGTGTCAAGCTTGCAACGAGAGCTTTCATTCGAAGGATGCTTTGCTTCAACATTGCAATCAACACACCAGCAAGAAGGATTTTATTTGTCATATTTGCGGCAAGGATTTTCAAGGACCTCAGTACTTACAACGGCACATTCGACATCACAATGCTGCGAGGACCCACCAATGTGCAACTTGTGGCATGAGTTTTGTGCAGAAATACACCTTGTTAGCTCACATGCGAACGCACAGCGGAGAAAAGCCGTACAAATGTGATAAGTGCGGTAAAGGCTTCTCACAACATGGAAGTTTAACAACTCATCTGCGTAGTGTGCATTCAACTGAGAAGCGGTACGCTTGTGAATTATGCCCCATGAAATTCATGTTTAAAGTCTCTTTGCGTTTGCACGTGCAGAAGCACATGGGGCACGTGGAAAAGCGACACACGTGCGAAGTGTGCGGAAAGTCATTTAGACTGGCGTACGCCTTGAAAACGCACGCCCTGAGACACACCAATGGGATTACACACACTTGCATCGTTTGTAAAAAAGGTTTCATTGGTTCGGGGGCTTTGAAACGTCACATGAGGacacataccggcgagaaacctTTCGAGTGCCACATATGCCACTTTAAGTGTACGCAAAAGTATAATTTGCGCATACATATAAATTCACATATCAGGAACAGAGTTTCCAGTGCAGTAAATGACAGTGAGTTTGCGAtagaaaaagaagacaaaacTTATACATGA
- Protein Sequence
- MIIDIVDDPQICVICSKLLEKFYDFRLVCLNTEKRIRCFIEEGHHDLPVDLKLLIQENCPGVEPEAGIVKLKEENVEQEVQLDHLQEYLNITAQEVYLIDSTDKEKVIDAENVNEIINQSNHLLDADKVIKSEDMIDRNENCQEVDFKEQSELCELKRNEYKILQVEDIRNKTALPKHTCQFCKIRFVNKLSYLKHVQVHSDNLKCDVCSKTFCKNWELKRHMKSHAKSRQCDLCNESFVDHKSLRQHRAVHAKQPAICVICDKTFSTQSHLKTHLTNIHAANITKRKFECQACNESFHSKDALLQHCNQHTSKKDFICHICGKDFQGPQYLQRHIRHHNAARTHQCATCGMSFVQKYTLLAHMRTHSGEKPYKCDKCGKGFSQHGSLTTHLRSVHSTEKRYACELCPMKFMFKVSLRLHVQKHMGHVEKRHTCEVCGKSFRLAYALKTHALRHTNGITHTCIVCKKGFIGSGALKRHMRTHTGEKPFECHICHFKCTQKYNLRIHINSHIRNRVSSAVNDSEFAIEKEDKTYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465231;
- 90% Identity
- iTF_00465231;
- 80% Identity
- -