Dpar000475.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:2400513-2403456[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.002 0.19 13.7 0.1 2 23 111 132 110 132 0.88 2 17 0.087 8.1 8.5 8.9 1 23 138 160 138 160 0.98 3 17 0.29 27 6.9 1.5 1 21 166 186 166 188 0.83 4 17 8.4e-05 0.0078 18.0 1.5 1 23 194 217 194 217 0.98 5 17 0.00022 0.02 16.7 2.9 1 23 229 252 229 252 0.95 6 17 0.0019 0.18 13.8 0.6 3 23 263 283 262 283 0.98 7 17 5.3e-05 0.0049 18.7 3.9 1 23 289 311 289 311 0.98 8 17 8.6e-07 7.9e-05 24.3 1.8 1 23 317 339 317 339 0.98 9 17 2e-06 0.00019 23.1 1.5 1 23 415 437 415 437 0.97 10 17 0.092 8.5 8.5 0.1 1 23 441 463 441 463 0.97 11 17 0.1 9.6 8.3 0.2 1 23 469 491 469 491 0.89 12 17 0.61 56 5.9 0.2 1 23 497 519 497 519 0.91 13 17 7.9e-06 0.00072 21.3 3.4 1 23 554 576 554 576 0.97 14 17 0.0021 0.2 13.6 0.7 3 23 587 607 586 607 0.99 15 17 0.0012 0.12 14.4 4.6 1 23 613 635 613 635 0.97 16 17 2.7e-05 0.0025 19.6 0.3 1 23 641 663 641 663 0.99 17 17 3.8 3.5e+02 3.4 0.2 1 19 669 687 669 690 0.82
Sequence Information
- Coding Sequence
- ATGTTAAGACATCAGGAATTCGGGGAAACAAAACAAGGCACTTGCTCAGTACGATACTCTCATACCAGGTCGGGCAGTCTGTCGGCCGAAGGTCATCCTCCACGCAGATTGGCGAACTCAGATTTGTTTGTTAAGGAAGAGCCCAGTGTTACCGTCTACGCTAGGGGCAAACGTGCAGAGCAACAAAATTCGGAAATCAAAGCGATATTAAGACGTAAGCGAAGGCGCGAATTAAGAAATCAGAAACGTTTGAGGCAAAACGATAAACGCTTGAAGCAGAGTGAAGATTTGGACAAAGCAAGTGACGCGAGCGAGGTCAATCAAGCGATCGAGTGCGAAATCTGCGATAAGACTTTCAAGGACAACGTAGATTTCGGGTTGCACTCAATCGAGCACAGCGCCAATAAAAAATTCTCCTGCCACATGTGCAGGTACACGTGCATTTCGAAATTCCACTTCACGATGCACATACGCGCGCACGAGGGTAACACTCGACACAAGTGTGAGATTTGCAAGCAGGCTTTCGTCACCAGGATTTACGCACTCGAGCACAAGTACTttcacaccggcgagaagccgttccaGTGTGAAGTTTGCGGTAAAGGCTTCATGTACTCCCGATTCTTAAATTCCCATCGGCGGTCGCAGCACTGGGAGATAATGACCGGAACGCCTCTGGTTAAGTACGACTGCCTTATTTGCAATAAACATTACACAAGCTCATCGGGTTTGAAGCGTCACAAGATCAGCAAGCACGATGTCGTAGGTGCTGAAATTTCCGTGCTGTGCGATATCTGCGGGAAGAGGTTGGCCAGTAAGGAGAATCTAAAATTCCATCGCAGAATCCACACGGGTTATAAACCGCACACGTGCGAGTTTTGCAGCAAGTCTTTCACGAAAAAGGAGCAACTTAAGGAACACGAAAGAGTTCACACGGGAGAAAGACCGTTCGTCTGCAAGTTCTGCGACAAAGGCTTCACGCAGAGAAGTTCCTTGAGAATACATGAGAGGACTCACACCGGTGAACGGCCTTACGTGTGCAGGTTTTGCAGCAAGGGggtCAGTCTCACATCTCACATTGGCGGACAGGTAAAGGAGGAGGAAGAACCCGAACCGACCTACGACTGCAGATTCTGCAAAGACGGCATCAAAATGAGCCTTCCCGATCTCAACTTGCACTATAAATCCACGCACAAAGGCAAGAGGTTACCTCGACGAGTGAAGGCCCCTTTCGTGCTCCTGCACAAGTGCGATGTTTGCGGACGAAGTTTCAAGTCGGCGATGACCTTGAACAAGCACATGGAGCTCCACAACATCCACTTCGATTGTGAAGTGTGCGACGTGGATTACGGTAATGCCCTCTATTACATCCAGCATCTGCAGACTCACagtgaaaagaaaatgtttaactGTGTCTACTGTGATTACTCGACGACGAATAGCAGCGATGTTATTCCACACTTGAGCGCGCACGAAGGCAAATATAAGTACGCGTGCGAAATTTGTAACGAGGGGTTTCACATATTGGAGTGGTTTGAGGAACATAGTAATCTCCACGCTGGCATCAAACCGTTCGCGTGCGAATTCTGCGACAGAAGTTTCCTGTACTCGAGGCACCTTTCCTGTCACAAGAAAATACTGCACAAGGAAATGCTGACCTACGTGTGTCACATATGTAAGAAGAAGTCAAGTTCGAAAAGGAACCTGAAGAGGCACATGGTCGTCCACAACGGTGGCAGAACTAAGACCCCCGTGCTGTGCGAAATTTGCGGGAAGGAGATGACCAGCAGGACGATGCTGAAGTACCACCTGAGAAGTCACGTAGGTTACAAACCTCATTCGTGCAAGTTTTGCAGCAAGACTTTCACGCGGAGGCAACGACTTGAGGAACACGAAAGGATTCACACGGGGGAAAAGCCGTATGTTTGCAAATCTTGCGGGAGGGGCTTCACGCAAGCGACGCCCTTGAAGGTGCACGAGAGAACTCACACGGGCGAGCGTCCTTACGTGTGCAGGTTTTGCAGCAAGGGGTACATTTCGAAAGGCGTCATGGATATGCACGTGAAAAACTGCCAAGgcagataa
- Protein Sequence
- MLRHQEFGETKQGTCSVRYSHTRSGSLSAEGHPPRRLANSDLFVKEEPSVTVYARGKRAEQQNSEIKAILRRKRRRELRNQKRLRQNDKRLKQSEDLDKASDASEVNQAIECEICDKTFKDNVDFGLHSIEHSANKKFSCHMCRYTCISKFHFTMHIRAHEGNTRHKCEICKQAFVTRIYALEHKYFHTGEKPFQCEVCGKGFMYSRFLNSHRRSQHWEIMTGTPLVKYDCLICNKHYTSSSGLKRHKISKHDVVGAEISVLCDICGKRLASKENLKFHRRIHTGYKPHTCEFCSKSFTKKEQLKEHERVHTGERPFVCKFCDKGFTQRSSLRIHERTHTGERPYVCRFCSKGVSLTSHIGGQVKEEEEPEPTYDCRFCKDGIKMSLPDLNLHYKSTHKGKRLPRRVKAPFVLLHKCDVCGRSFKSAMTLNKHMELHNIHFDCEVCDVDYGNALYYIQHLQTHSEKKMFNCVYCDYSTTNSSDVIPHLSAHEGKYKYACEICNEGFHILEWFEEHSNLHAGIKPFACEFCDRSFLYSRHLSCHKKILHKEMLTYVCHICKKKSSSKRNLKRHMVVHNGGRTKTPVLCEICGKEMTSRTMLKYHLRSHVGYKPHSCKFCSKTFTRRQRLEEHERIHTGEKPYVCKSCGRGFTQATPLKVHERTHTGERPYVCRFCSKGYISKGVMDMHVKNCQGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -