Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:3677444-3682700[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.011 1.1 11.3 1.1 1 23 42 64 42 64 0.98

2 26 0.012 1.1 11.2 0.9 1 23 71 93 71 93 0.98

3 26 0.29 27 6.9 1.0 1 23 99 121 99 121 0.97

4 26 0.0036 0.33 12.9 2.2 1 23 127 149 127 149 0.97

5 26 0.12 11 8.1 4.7 1 23 155 177 155 177 0.98

6 26 0.21 19 7.4 1.8 1 23 183 205 183 205 0.97

7 26 0.00045 0.041 15.8 1.4 1 23 239 261 239 261 0.98

8 26 1.4 1.3e+02 4.8 8.1 3 23 269 289 267 290 0.94

9 26 0.00019 0.017 17.0 1.7 1 23 306 328 306 328 0.99

10 26 5.4e-05 0.005 18.6 2.5 1 23 334 356 334 356 0.98

11 26 0.027 2.5 10.2 1.6 1 20 362 381 362 383 0.94

12 26 2.1e-05 0.0019 20.0 2.0 1 23 418 440 418 440 0.99

13 26 0.00021 0.02 16.8 4.8 1 23 446 468 446 468 0.98

14 26 0.0053 0.49 12.4 2.2 1 23 474 496 474 496 0.97

15 26 0.026 2.4 10.2 0.9 1 23 502 524 502 524 0.96

16 26 0.00016 0.014 17.2 1.6 1 23 530 552 530 552 0.98

17 26 0.02 1.8 10.6 2.7 3 23 560 580 560 580 0.98

18 26 0.012 1.1 11.3 2.8 1 23 586 608 586 608 0.97

19 26 0.92 85 5.3 4.6 1 23 614 636 614 636 0.97

20 26 0.0018 0.16 13.9 2.7 2 23 643 664 642 664 0.97

21 26 0.001 0.096 14.6 3.2 1 23 698 720 698 720 0.98

22 26 0.00018 0.017 17.0 1.5 1 23 726 748 726 748 0.97

23 26 0.035 3.2 9.8 2.6 1 23 754 776 754 776 0.97

24 26 0.0027 0.24 13.3 6.2 3 23 784 804 782 804 0.96

25 26 0.00047 0.044 15.7 2.2 1 23 810 832 810 832 0.96

26 26 0.0014 0.13 14.2 0.8 1 23 838 860 838 860 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.011	1.1	11.3	1.1	1	23	42	64	42	64	0.98
2	26	0.012	1.1	11.2	0.9	1	23	71	93	71	93	0.98
3	26	0.29	27	6.9	1.0	1	23	99	121	99	121	0.97
4	26	0.0036	0.33	12.9	2.2	1	23	127	149	127	149	0.97
5	26	0.12	11	8.1	4.7	1	23	155	177	155	177	0.98
6	26	0.21	19	7.4	1.8	1	23	183	205	183	205	0.97
7	26	0.00045	0.041	15.8	1.4	1	23	239	261	239	261	0.98
8	26	1.4	1.3e+02	4.8	8.1	3	23	269	289	267	290	0.94
9	26	0.00019	0.017	17.0	1.7	1	23	306	328	306	328	0.99
10	26	5.4e-05	0.005	18.6	2.5	1	23	334	356	334	356	0.98
11	26	0.027	2.5	10.2	1.6	1	20	362	381	362	383	0.94
12	26	2.1e-05	0.0019	20.0	2.0	1	23	418	440	418	440	0.99
13	26	0.00021	0.02	16.8	4.8	1	23	446	468	446	468	0.98
14	26	0.0053	0.49	12.4	2.2	1	23	474	496	474	496	0.97
15	26	0.026	2.4	10.2	0.9	1	23	502	524	502	524	0.96
16	26	0.00016	0.014	17.2	1.6	1	23	530	552	530	552	0.98
17	26	0.02	1.8	10.6	2.7	3	23	560	580	560	580	0.98
18	26	0.012	1.1	11.3	2.8	1	23	586	608	586	608	0.97
19	26	0.92	85	5.3	4.6	1	23	614	636	614	636	0.97
20	26	0.0018	0.16	13.9	2.7	2	23	643	664	642	664	0.97
21	26	0.001	0.096	14.6	3.2	1	23	698	720	698	720	0.98
22	26	0.00018	0.017	17.0	1.5	1	23	726	748	726	748	0.97
23	26	0.035	3.2	9.8	2.6	1	23	754	776	754	776	0.97
24	26	0.0027	0.24	13.3	6.2	3	23	784	804	782	804	0.96
25	26	0.00047	0.044	15.7	2.2	1	23	810	832	810	832	0.96
26	26	0.0014	0.13	14.2	0.8	1	23	838	860	838	860	0.97

Sequence Information

Coding Sequence: ATGGGTGTAAATAGAATAAAgtgtcaaggGTTTTTCAAACCTGAAACCGTCGAAGAAAGTCGCACGTGTAATCCGAAATTTGAAACTCACGAGCACGTGTTgacacacaccgacgagaacCCGTTTAGATGCCCCGCATGCGACTATAAATGTCGGGTATACGAAGAACTGTTGAAGCACGCGCTGACACACACCGATGACGAAGTGCCTTTTCGTTGCGCCGTTTGCGATTTCAAATGCGGACTGCCTGCACGTTTGAACCGgcacatgttaacacacacCGAAGACAAACCGTTCGCCTGTGATCTATGCGAGTATAAATGCGAACGAGTCGGGATCTTGAACaagcacatgttaaaacacaccggcgagaagcgtTTTGCttgcgacctttgcgattataaatgtcgacgtgCCGCTACCTTGAAGGAACACAAGTTAAAACACGGCGGCGAGAAGACGTTCCGATGCGACGTTTGCGACTACAAATCCCAACTTAAAACGTGCCTGAAGCAACACATGTACAcgcacacgggcgagaagccgttcagttgtgatctttgcgattataaatgccgcgCCAGCGCTCCTCTGAAATTGCACAAGTTGAAACACtcgggcgagaagccgttttGTTGCCACCTCTGCGATTTCAAATGTCGAGAGAAGAGGATAATGAAGCAGCACACGTTagcgcacaccggcgagaagccttaCGCTTGCGACGTTTGCGATTATAGATGTCGACGGGTCGACGCCTTGAAACAACACAGGTTAACGcataccgacgagaagccgctcgcttgtgatctttgcgagtTCAGATGCCGAAGTCACGGTCACTTGAAGGAGCACAGATTGAGGCACCATTTAACACGCAACAAACCGAATTTAACACGTACCGGCGGCAGGCGATTTAAGTGTGATATTTGCGACGGCAAGTTCGAACTTAAAAGGTATTTGCAGCGGCATATGTACACACACACGGGCGAGAAACCGTTTTcttgtgatgtttgcgattatCAGTGCCGGCAAGCCGAAAATTTGAGAAGACATAGGTTAACACATACTGGCGAGAAACCGTTTGCCTGTGATCATTGCGATTATAGAGGCCGAGATCGCTATAAATTGAAACAGCACAGATCTCAACGGAAGTCCAAATCTAAAATCGTGCACAAAAGGAAATTGAAGAGTCGTAAAACTCAAAGCCATTTAGAAGAGCACGTGTCGCTACGCACCCGCGAAAAGCCATTTCGATGCGCCgtgtgcgattataaatgtgCAAGATCCGAAGAACTCAAAAAGCACATGCTGACGCACAAGAGCGAAAGATTTTTCCACTGCGCAATTTGCGGTTACAAGTGTCGACGCTTCGCTaacttaaaaaaacacatactgacgcacaccggcgagaaaccattcagttgtgaCCTGTGCGATTTCAAGTGCGCACGGCCCGAGTCTTTGAAGCTACACAAGTTAagacacaccggcgagaaaccctTTGCttgcgacctttgcgattacaaaacTCGATACAGAGGATCGTGGAAACGGCACGGGTTAAAACACACCGGTGAAAAAGCGTTCACCTGTAAGATTTGCGATCTCAAGTACCAAACCAAGAGGACCTTGAAACAGCACATattaatacacaccggcgagaaaccgctcggttgcgatctttgcgattacaagtgtaGACAAGCCGAAAGTTTGAGGCTGCATAGGTTAAAACATACCGGCGGGAAACCCTTCGCTTGCgatctttgtgattacaaatgTCGGTCAAGAGCAACGTTGAACTTGCATAAGTTAAAACACGCCGGCGATAAACCGTTTTGTTGCAAGATTTGCGATTACGAATGCTCAGAGAGGAGAATCTTGAAGCAGCACGTATTGACTCACACTTGCGAGAAACCgatcagttgtgatctttgcgatttcaGGTGCAGACGAGTCGAATATCTGAAGCGACACATGTTGagacataccggcgagaagtcTTTCGCTTGCGATCTTTGTGATTACAGGTGTTGGGAGAAAAAGTCTTGGAGTctgcacaagttaaaacacaccggtaagaaaccgttcagttgtaagATTTGCGATTACAAGAGCGCAGAAAAGGACAAATTGAAACACCACATGTtgaaacacaccggcgagaaaccattCGCGTGTcctctttgcgattacaaatgcacGCAGGCCACAAGCTTGAAGGTTCATAGGTTGACGCACAGCGGCGAGAAACCTTTTGCTTGCGATCTCTGTGATTACGCTTGTCGAGAAAGGAGATCCTTGAAGATGCATAAGTTGAAGCACACTGGTGATAAGCCGTCTTGTTGTAAGATTTGCAATTACAGATGCGTAGACAAGAAAACCTTGGAGcggcacatgttaaaacaccCTTGCGTGAAACCGTTcgcttgtgatctttgcgattacaaatgccgacgtGCCAGTAGCTTGAGAAATCACAAATTGATacataccgacgagaagccTTTTGCTTGCGATGTTTGCGGTTTTAAATCCCGAACGACCTCAAACTTGGGAAGACATAAATTAACTCATCAGCGAAAAGCATAA
Protein Sequence: MGVNRIKCQGFFKPETVEESRTCNPKFETHEHVLTHTDENPFRCPACDYKCRVYEELLKHALTHTDDEVPFRCAVCDFKCGLPARLNRHMLTHTEDKPFACDLCEYKCERVGILNKHMLKHTGEKRFACDLCDYKCRRAATLKEHKLKHGGEKTFRCDVCDYKSQLKTCLKQHMYTHTGEKPFSCDLCDYKCRASAPLKLHKLKHSGEKPFCCHLCDFKCREKRIMKQHTLAHTGEKPYACDVCDYRCRRVDALKQHRLTHTDEKPLACDLCEFRCRSHGHLKEHRLRHHLTRNKPNLTRTGGRRFKCDICDGKFELKRYLQRHMYTHTGEKPFSCDVCDYQCRQAENLRRHRLTHTGEKPFACDHCDYRGRDRYKLKQHRSQRKSKSKIVHKRKLKSRKTQSHLEEHVSLRTREKPFRCAVCDYKCARSEELKKHMLTHKSERFFHCAICGYKCRRFANLKKHILTHTGEKPFSCDLCDFKCARPESLKLHKLRHTGEKPFACDLCDYKTRYRGSWKRHGLKHTGEKAFTCKICDLKYQTKRTLKQHILIHTGEKPLGCDLCDYKCRQAESLRLHRLKHTGGKPFACDLCDYKCRSRATLNLHKLKHAGDKPFCCKICDYECSERRILKQHVLTHTCEKPISCDLCDFRCRRVEYLKRHMLRHTGEKSFACDLCDYRCWEKKSWSLHKLKHTGKKPFSCKICDYKSAEKDKLKHHMLKHTGEKPFACPLCDYKCTQATSLKVHRLTHSGEKPFACDLCDYACRERRSLKMHKLKHTGDKPSCCKICNYRCVDKKTLERHMLKHPCVKPFACDLCDYKCRRASSLRNHKLIHTDEKPFACDVCGFKSRTTSNLGRHKLTHQRKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465259;
90% Identity: -
80% Identity: -