Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: Sall1
Assembly: GCA_958336345.1
Location: OY284476.1:40283666-40289317[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.13 12 8.1 0.4 2 22 163 183 162 186 0.89

2 11 0.016 1.4 10.9 0.1 3 23 195 214 193 214 0.93

3 11 3.3e-05 0.0031 19.3 0.4 1 23 220 242 220 242 0.96

4 11 7.1e-07 6.6e-05 24.6 5.3 1 23 248 270 248 270 0.98

5 11 2.2e-05 0.002 19.9 1.4 3 23 278 298 277 298 0.98

6 11 1.3e-05 0.0012 20.6 0.4 1 23 312 334 312 334 0.97

7 11 0.00019 0.018 16.9 1.6 1 23 339 361 339 361 0.95

8 11 5.5e-07 5.1e-05 24.9 0.2 1 23 367 389 367 389 0.98

9 11 2.3e-05 0.0021 19.8 1.8 1 23 395 417 395 417 0.98

10 11 2.6e-06 0.00024 22.8 4.6 1 23 423 445 423 445 0.99

11 11 6.1e-06 0.00056 21.6 0.6 1 23 451 473 451 473 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.13	12	8.1	0.4	2	22	163	183	162	186	0.89
2	11	0.016	1.4	10.9	0.1	3	23	195	214	193	214	0.93
3	11	3.3e-05	0.0031	19.3	0.4	1	23	220	242	220	242	0.96
4	11	7.1e-07	6.6e-05	24.6	5.3	1	23	248	270	248	270	0.98
5	11	2.2e-05	0.002	19.9	1.4	3	23	278	298	277	298	0.98
6	11	1.3e-05	0.0012	20.6	0.4	1	23	312	334	312	334	0.97
7	11	0.00019	0.018	16.9	1.6	1	23	339	361	339	361	0.95
8	11	5.5e-07	5.1e-05	24.9	0.2	1	23	367	389	367	389	0.98
9	11	2.3e-05	0.0021	19.8	1.8	1	23	395	417	395	417	0.98
10	11	2.6e-06	0.00024	22.8	4.6	1	23	423	445	423	445	0.99
11	11	6.1e-06	0.00056	21.6	0.6	1	23	451	473	451	473	0.96

Sequence Information

Coding Sequence: ATGTGTAGGGTATGTCTGGCTACTACCAATGTTAAGTACATTTTTGACATTATACATGAGGGTACCTTGATAAGTAACCTTTTAATGGAATTCACATCTATTGTTGTACAAGAAAATGATATAATGCCGAAACACATATGTGATACTTGCATTTCGGAACTTATATATTGCTCCCAATTCAAGGAAAAATTTCTTCAATCACAATCCACTTTGGAAGAAATCATAAAGTATTCCAATATAAGGCAAGATGAAActgaaaaacaagaaattacaCAAACAGAAAGCTGTGGAGAACAAGAATCAGACTCAAACttgaatgaaaaattaaacgGATCAATTGTGAAAGAAGAAACTGAAGTAACAATACAATATAGCGAAGAAGGAAGTTTTGATCCAAACTTACTTCTTAATGACCTAAACATGTCCAACTTTGAAAATGAAGAGGTGAAAGATGtgaataaaagaattaattgcaaGTTGCCTTTAAGTTGTTCTAAATGTGGTGATGATTTTCAAACTTTAGAGGAACTTGAGGCACACCATAAAGAAGTAAGGCATCCCaggaaaataaagaaacttGCATGCCAAATATGTGGAAAATTGTATGCACGCCCTAAATTGGAAATTCACATGCGTACACATACAAAAGAGAAACCATTTGTATGCAGTATATGTTCTAGAGCGTTCAGCGCGAAATATAATTTAGAAAGGCATTCCATGTTACACACTGGAGAAAGACCTCACAAATGTAATATTTGTGGTaaagGTTTTAGACGATCCCGCAATTTAAGCGAACACATGTGCACTCATACTGGAGAGAAACCGCTCTTATGTGATGTTTGTGGTAGAGGTTTCAGTCGACTTTCAGAGTATCGTAATCATATGCATAGTCATCAGTTTACTAATGGAAAATTAGGTAAACAGTCAAAGGAATTTCAGTGCGTCGTATGTCAAAAAATATTCTCTTCAAGAAACACATTAAAGGTACACATGGTAATTCACGGTGAAAAACCTTTCTTATGCAGTGAGTGTGGTAAAGGATTTCACGTTCACGCCGGATTACAGTCTCACATGAAAGTGCACACAGGAGAAAAACCGTATTCATGTTCAGAATGCGGCAAACGTTTTTCACAAGTCGCAGCCCTAAGGACGCATATGTTGATTCACAGTGGCCAAAGACCTTACACTTgcgaaatttgtttaaaaacgtTTGTACAGAAGCCTCATTTAAAATATCATGTAATGATGCATAGTGGAGAGAAACCTTACAAATGTTCATTGTGCAACAAATGCTTTTCCACAAAGTCAGCACGAACTGTTCACATTCGAACCCATACTGGTGAAACCCCCTACGTTTGTGATGTATGTGGACGAGGATTTTATGATTCAAGCACCTTGAAGAAACATAAAGGAAGACATGGTCGTATAAAAACTGTTGATGAAACAATTTCAGTGAAATCTGAATTAGTGTAA
Protein Sequence: MCRVCLATTNVKYIFDIIHEGTLISNLLMEFTSIVVQENDIMPKHICDTCISELIYCSQFKEKFLQSQSTLEEIIKYSNIRQDETEKQEITQTESCGEQESDSNLNEKLNGSIVKEETEVTIQYSEEGSFDPNLLLNDLNMSNFENEEVKDVNKRINCKLPLSCSKCGDDFQTLEELEAHHKEVRHPRKIKKLACQICGKLYARPKLEIHMRTHTKEKPFVCSICSRAFSAKYNLERHSMLHTGERPHKCNICGKGFRRSRNLSEHMCTHTGEKPLLCDVCGRGFSRLSEYRNHMHSHQFTNGKLGKQSKEFQCVVCQKIFSSRNTLKVHMVIHGEKPFLCSECGKGFHVHAGLQSHMKVHTGEKPYSCSECGKRFSQVAALRTHMLIHSGQRPYTCEICLKTFVQKPHLKYHVMMHSGEKPYKCSLCNKCFSTKSARTVHIRTHTGETPYVCDVCGRGFYDSSTLKKHKGRHGRIKTVDETISVKSELV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465229;
90% Identity: iTF_00465229;
80% Identity: -