Dpar000625.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284475.1:3634309-3651180[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.00016 0.015 17.2 1.5 1 23 49 71 49 71 0.98
2 36 0.0012 0.11 14.4 3.4 1 23 105 127 105 127 0.97
3 36 0.038 3.5 9.7 4.0 1 23 133 155 133 155 0.97
4 36 0.1 9.6 8.3 2.6 1 23 161 183 161 183 0.96
5 36 0.00012 0.011 17.5 2.6 1 23 189 211 189 211 0.98
6 36 5.8 5.4e+02 2.8 3.2 1 23 217 239 217 239 0.96
7 36 0.21 20 7.3 2.5 2 23 246 267 245 267 0.96
8 36 0.48 44 6.2 5.3 2 23 274 295 273 295 0.97
9 36 0.03 2.8 10.0 2.2 1 23 301 323 301 323 0.98
10 36 4.2e-05 0.0039 19.0 2.2 2 23 442 463 441 463 0.97
11 36 2.7e-05 0.0025 19.6 3.4 1 23 469 491 469 491 0.99
12 36 0.015 1.4 11.0 6.6 1 23 497 519 497 519 0.97
13 36 0.00028 0.026 16.4 0.9 3 23 527 547 525 547 0.98
14 36 0.00072 0.067 15.1 0.6 1 23 553 575 553 575 0.98
15 36 0.097 9 8.4 1.9 1 23 581 603 581 603 0.98
16 36 7.9 7.3e+02 2.4 2.8 1 14 608 621 608 622 0.90
17 36 0.0012 0.11 14.4 1.7 2 23 634 655 633 655 0.97
18 36 0.016 1.4 10.9 5.9 1 23 661 683 661 683 0.97
19 36 0.0001 0.0093 17.8 3.1 1 23 689 711 689 711 0.98
20 36 0.0019 0.17 13.8 5.8 1 23 717 739 717 739 0.98
21 36 0.058 5.3 9.1 2.8 1 23 745 767 745 767 0.96
22 36 7.8 7.2e+02 2.4 7.0 1 23 773 795 773 795 0.96
23 36 0.011 0.99 11.4 4.7 1 23 801 823 801 823 0.96
24 36 0.039 3.6 9.7 3.6 1 23 829 851 829 851 0.96
25 36 0.73 67 5.7 2.3 2 23 858 879 857 879 0.96
26 36 0.00048 0.044 15.7 2.5 1 23 885 907 885 907 0.97
27 36 5.8 5.3e+02 2.8 4.9 1 23 999 1021 999 1021 0.96
28 36 0.0039 0.36 12.8 1.5 2 23 1028 1049 1027 1049 0.97
29 36 0.031 2.9 10.0 5.6 3 23 1057 1077 1055 1077 0.97
30 36 0.009 0.83 11.7 2.9 3 23 1085 1105 1083 1105 0.96
31 36 0.14 13 7.9 1.1 1 23 1111 1133 1111 1133 0.95
32 36 0.0026 0.24 13.3 4.8 1 23 1139 1161 1139 1161 0.98
33 36 0.0078 0.72 11.8 2.9 1 23 1167 1189 1167 1189 0.97
34 36 0.094 8.7 8.5 3.1 1 23 1195 1217 1195 1217 0.98
35 36 0.0012 0.11 14.4 2.2 1 23 1223 1245 1223 1245 0.97
36 36 0.78 72 5.6 2.2 3 23 1253 1273 1251 1273 0.96

Sequence Information

Coding Sequence
ATGGTCCACAAAAGCATTCTTTATGTCCTGTTGATTGTTGAGTGGATTATCTTGATACACCATTGCACCAGATGCCAAAATGCCAAATCAAGAACGTTCGAATGCCCCGAATTCAAAACTCAAGGACTCGGTAACGACAAGTTGTTCAGATGCGTCGTTTGCAATTACGAATGTCAACGTCCCGCGCAATTACAACGGCACATGCTCACGCACACCGAGGAGAAGCGGCTCAAGTGTGCTCCTTGCGACTACCAGTGCGAACAGCTCCAAGTTTTAAAGCGGCATACGTCAAAACATACCGACAAGAAGCCGTTCGCTTGTAGCCTTTGTAATTACAGGTGTCGACGAGACGAATACTTGAATCGgcacatgttaacacacacGCAGGAGAAGTCGTTCAACTGTGGCCTCTGTAAATACAAGTGCCGACTGCTTGGGAGCTTGAAGCGGCACATGTCGAAACACtccggcgagaagccgtacaGCTGCGCCGCCTGCGATTACAAATCTCGTTGTCTCGCCAACTTGAAGCGCCACATGAAGAcccacaccgacgagaaaccgttccgTTGCGCCGTTTGCGATTACGAATGTAAACGATCTGAGCTGTTGAAGCGGCACATGTCGTCGCACACCAACAAGAAGCTGTTCGCTTGCGGCtcttgcgattacaaatgccagGAACGTGAAACTTTCAAGCTGCACAAGCTAACGCACGCCGGCGAGAAGCTGCTTAAATGTGACACCTGCGAGTACAAAAGTCGGTTTAAAAACGACCTGAGGGAACATAAGTACACGCACACGGGCGAGAAACCGATTCgctgtgacctttgcgattacaagtgccggCACGGCAAATCACTGAGGCTGCACAGGTTGAAACACACGGGCGAGTTGCCGTTTAGTTGCGagctttgcgattacaagtgcggACAAGTCGGACAGTTGAAATCGCACaggttaaagcacaccggcgagaggcCTTTCGCTTGCGATCTTTGCAGTTTCAAGTGCCGGCAGTCCGAAGAGACAAGGATAGACGTCTTTAGCGCGAAAGGCTTCTTTTGTCGAGTCCAGCTGCCTGCTCCCGTCTCTCCTTTACCGGCTACACCTCCTCCAAAGAAAAGACGCCGAACAGCTTCACCGGAGTATCAAGGTCAAAACAGTTTACCGTTAAGGTGCCAACAGGCTTCCAAATTCGAAACCGTAGAAGAGGAACGTCATAAACTTAAAACTGAAGGATGTTTAAAAACGCACCAATtaacacacaccgacgagaagcgaGCCGGCTTTCTGTTAAGACACGCCCGGGAAACCTCGCTCGAGTGTGATCTCTGCGCTCGCAAATTTAAAACAGCGCAGCACTTAAGACGGCATATGTTGACGCACACCGATCAGAAACCGTTCCGCTGCAAtctctgcgattacaagtgccgacAGGCCGAAAATTTAAAGAGccacatgttaacgcacaccgACGACAGGCCGTTCTCCTGCGacctctgcgattacaaatgcaaGCGGCGACGTTATTTAAAGCGGCACGTGTTCAAGCACGCCGGCGAGAAACAGTTCGGTTGCACTTTTTGCGATCGCAAGTTCCGTTACGCCGACAGTTTGAGACTTCACGTGATGACGCACACCGGCGAATTGCTTTTTCGCTGTGCCGTTTGCGACTACAAATGTGGACGATCCGGATTATTAGAGCAGCACATGctaatacacaccgacgagaagttGTTTCGTTGCGGCTTTTGCGGTCACAGATGTCAGGACGGTGGGGATCTTGAAGCGCACAAATTAACGCACGTCGAGAAGACCTTCGagtgtgacgtttgcgattacaaatgccgaacTAAAAACGAGCACGAGCCGAGACACACCGACGAGGAGCCACTCAGGTGCGTCGTCTGCGACTACAAATGTCGAACGCCCAAAGATCTGAAAACGCACGTGCTaacgcacaccgacgagaagccctTTCACTGCGCGACTTGCGATTACAAGGCTCGAAGTAAAAGTCACTTGACGCAACACATGTACAGACACACGGGCGAGAAGCGGTTCCGTTGCAGTATTTGCGACTACAAGTGCATAGACAGTAGAAACTTGAAGCAGCACCTAttaacgcacaccggcgagaaaccgtacagttgcgatctttgcaaTCACAAGTGCACGCAAGCCGAAAATTTGAAGCGACACAGGCTAaaacataccggcgagaagccctTCGCTTGCGATCTTTGTGATTACCGGTGTCGAGAGAAGAAAGCTTTGCAACTGCATAAGTCAAGACACACTGACGATAAATCGTTTTGCTGCAGGGTTTGCAACTATAAATGTCTGAACAGCAAGACATTGAAACAGCACGTAttaacgcacaccggcgagaaacgtTTCAGTTGCCagctttgcgattacaagtgcggACGGGCCTATCATTTGAAGCGACACACCTTAGCGCATGGCGCCGGGAAACCTTTCGCTTGCGacctctgcgattacaaatgccgacaaaGCAGATCTCTGAAGCTGCACAACTTGAAACACGCCGGGGAGTTACCGGTTagttgtgatgtttgcgattacaagtgcggACACATCGGACAAATGAACCAGCACAAGTTAACGCACACGGGCGAGAAACCTTTCgcttgcgatctttgcgattataaatgccggcaggCCGGGTACTTGAAACGACACAGGTTAACACATACTGGGGAGAAGCCGTTggcttgtgatctttgcgattacaaatgctgGAAGCACAAGAGTTTGAATCGGCACAGATGCCAATGGACTTCTGAATCAAACACTGTAGACGACAAAACATTCAAAATAATATGTGGTTCTAAATTGAAAGCTGAAGGGCTTTTAGAAGAAGAGCACGCGTTGAGGCACGCCGGCGAGAAGCAATTAAGGTGTGTCGCAGACGATTATAAATTTCAAACGCCCAAGGATCTCAAAAAGCACGCCGATGAAAAGCCCTTTCACTGCGCGACCTGCGATTACAAATCGCGCATTAAAACCAACTTCATGCAACATACGTACAGACATACGCGCGAGAAGCGGCTTCGATGCAGcatttgcgattacaaatgcgcAGACATTACGACCTTGAAGCAGCACCTACTAACgcataccggcgagaaacctTTCGGCTGTcacctttgcgattacagatgCGGACGAGCCGATCATTTGAAGCGACACAAACTAGTACACGCCGGCGAGAAACCTCTCgcttgcgatctttgcgattacaaatgccgacaacGCAAGTCTTTGAGAGCGCATAAGTTAAGACACACCGGCGACAAACCGTTTCGTTGCGaggtttgcgattataaatgtctaGACAGCAGGGCCTTGAAACAGCACGTCTTGgcacacaccggcgagaaaccgttcagttgtcacctttgcgattacaagtgcggACGGGCCGATAATTTGAGAAAACACAGTTTGACGCATGACGCCGAGAAACGTTTCGCTTGcgatctctgcgattacaaatgccgacaaaACGCATCTCTGAAGATGCACAAGTTGAAACACGCCGGCGAGttgccgtttagttgtgatgcTTGCGGTTACAAGTGCGGACAAGTCGGACATTtaaaacagcacaagttaactCACAAcagcgagaagccgttcgcttgcgatctttgcgattacaaatgccgacaggCCGGATACTTGAAACAGCACAGGTTAACACATATCGGGGAGAAACCGTTGgcttgcgatctttgcgattacaagtgctgGAAGCGCAAGGGTTTGAATCGGCACAGGTTAACTCATACTCAGTAG
Protein Sequence
MVHKSILYVLLIVEWIILIHHCTRCQNAKSRTFECPEFKTQGLGNDKLFRCVVCNYECQRPAQLQRHMLTHTEEKRLKCAPCDYQCEQLQVLKRHTSKHTDKKPFACSLCNYRCRRDEYLNRHMLTHTQEKSFNCGLCKYKCRLLGSLKRHMSKHSGEKPYSCAACDYKSRCLANLKRHMKTHTDEKPFRCAVCDYECKRSELLKRHMSSHTNKKLFACGSCDYKCQERETFKLHKLTHAGEKLLKCDTCEYKSRFKNDLREHKYTHTGEKPIRCDLCDYKCRHGKSLRLHRLKHTGELPFSCELCDYKCGQVGQLKSHRLKHTGERPFACDLCSFKCRQSEETRIDVFSAKGFFCRVQLPAPVSPLPATPPPKKRRRTASPEYQGQNSLPLRCQQASKFETVEEERHKLKTEGCLKTHQLTHTDEKRAGFLLRHARETSLECDLCARKFKTAQHLRRHMLTHTDQKPFRCNLCDYKCRQAENLKSHMLTHTDDRPFSCDLCDYKCKRRRYLKRHVFKHAGEKQFGCTFCDRKFRYADSLRLHVMTHTGELLFRCAVCDYKCGRSGLLEQHMLIHTDEKLFRCGFCGHRCQDGGDLEAHKLTHVEKTFECDVCDYKCRTKNEHEPRHTDEEPLRCVVCDYKCRTPKDLKTHVLTHTDEKPFHCATCDYKARSKSHLTQHMYRHTGEKRFRCSICDYKCIDSRNLKQHLLTHTGEKPYSCDLCNHKCTQAENLKRHRLKHTGEKPFACDLCDYRCREKKALQLHKSRHTDDKSFCCRVCNYKCLNSKTLKQHVLTHTGEKRFSCQLCDYKCGRAYHLKRHTLAHGAGKPFACDLCDYKCRQSRSLKLHNLKHAGELPVSCDVCDYKCGHIGQMNQHKLTHTGEKPFACDLCDYKCRQAGYLKRHRLTHTGEKPLACDLCDYKCWKHKSLNRHRCQWTSESNTVDDKTFKIICGSKLKAEGLLEEEHALRHAGEKQLRCVADDYKFQTPKDLKKHADEKPFHCATCDYKSRIKTNFMQHTYRHTREKRLRCSICDYKCADITTLKQHLLTHTGEKPFGCHLCDYRCGRADHLKRHKLVHAGEKPLACDLCDYKCRQRKSLRAHKLRHTGDKPFRCEVCDYKCLDSRALKQHVLAHTGEKPFSCHLCDYKCGRADNLRKHSLTHDAEKRFACDLCDYKCRQNASLKMHKLKHAGELPFSCDACGYKCGQVGHLKQHKLTHNSEKPFACDLCDYKCRQAGYLKQHRLTHIGEKPLACDLCDYKCWKRKGLNRHRLTHTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-