Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: pita
Assembly: GCA_958336345.1
Location: OY284483.1:29162784-29164460[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3e-05 0.0012 20.6 2.8 2 23 252 273 251 273 0.98

2 9 4.4e-07 4e-05 25.2 3.3 1 23 279 301 279 301 0.99

3 9 3.2e-07 3e-05 25.7 2.0 1 23 307 329 307 329 0.99

4 9 3.9e-08 3.6e-06 28.5 2.0 1 23 335 357 335 357 0.98

5 9 3.2e-06 0.00029 22.5 5.5 1 23 363 385 363 385 0.99

6 9 4.4e-05 0.0041 18.9 2.2 1 23 391 413 391 413 0.97

7 9 1.3e-06 0.00012 23.7 1.2 1 23 419 441 419 441 0.99

8 9 1.6e-06 0.00015 23.5 0.2 1 23 447 469 447 469 0.97

9 9 0.00019 0.017 16.9 1.3 1 23 475 497 475 497 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3e-05	0.0012	20.6	2.8	2	23	252	273	251	273	0.98
2	9	4.4e-07	4e-05	25.2	3.3	1	23	279	301	279	301	0.99
3	9	3.2e-07	3e-05	25.7	2.0	1	23	307	329	307	329	0.99
4	9	3.9e-08	3.6e-06	28.5	2.0	1	23	335	357	335	357	0.98
5	9	3.2e-06	0.00029	22.5	5.5	1	23	363	385	363	385	0.99
6	9	4.4e-05	0.0041	18.9	2.2	1	23	391	413	391	413	0.97
7	9	1.3e-06	0.00012	23.7	1.2	1	23	419	441	419	441	0.99
8	9	1.6e-06	0.00015	23.5	0.2	1	23	447	469	447	469	0.97
9	9	0.00019	0.017	16.9	1.3	1	23	475	497	475	497	0.98

Sequence Information

Coding Sequence: ATGGAACTAGATTTTTCGAAAATATGTCGTGTTTGTCTGAACGAAGGAATTATGATGTCTATATTCAAAGTTAACGTCTCAAAGAAAATGATGGCCTGCGCTTCCGTTCAGGTATGGCAAAGCGACGGTCTTCCGGCTCAGATATGCAACAAGTGCTCCGCCAAGCTTCACATATCCTTTCAGTTTAAAAAACAGTGTGAAAAGTCGGATGCCAAGTTAAGACAGTATATTGCTAAAATTCCAAACGAGCAAAATCAACAACCCCCACAACAACAGCAGCAACAGCAAATACCACAGCAGGTGCAAGTAACACAACAAATAACTGAACCGACACAAGGTAGTTGTGTCTATATAGAATGCGCACCGATGTTGGATATTTCACAGGAacaaaaatttgataattttggcAACTTAACACATACACAAGCACCTCCGCTCactcaaataaattataatatacaACAGCCAAATCATTTGCATGCCCTGGGTAGCTATAGCTTACAGGCGGTCGGACAAGTACAAGTTTACAACGGGACTTACACTATGCCCTTACAACAAATGCAGCCCGCTGGATTAATGCAGAATCAAGTGATCGCACCGACTATGCAGCTGCAAGGTCAGCAGCAAATCATCCCTCAGCAACAACAACCGCAGATTATTCAGCCGCAGCAAATTCATGAACTAGACCCATCCAAGGAAAAAGTGAAGCTCATCAAAGCAAAACGTGAAACTAACTCTAACGGTGCGATTAAACAGTGTCCAACATGCAATAAACAATTCGCCACGACAACCAAACTGAGCAGGCACATGAAGACACATTCCACTGATATGCCATACAAGTGTAAGGTTTGTAATAAGGCTTTTTCACATAGcggaaattataaaatacatttgAGGATGCACACAGACGAACGACCATTTAGGTGTACGGTTTGCGGAAAAGGTTGTCGCCAGGCGCAAGATTTAGAAAAGCACATGAGGACACATACAGgagaAAGGCCACATCAATGTAAATTATGTACCAAAGCATTTTCCacaagttcaaatttaatagcGCACATAAGGACTCACACGGGGGAACGACCCTACGTTTGTTGTGTCTGCCAAAAAGCATTCTGCCAGTCGAATGAGCTAACGAAACACATGAGAACCCACACCGGTGAAAAATCGCACATTTGTGATATTTGCCATAAAGgttttAACGGTTCGAGCACATTAATAGTTCATAGAAGATCACACACCGGGGAGAGACCGTATGTTTGCACTGTGTGTAATAAGGGCTTTGCTCAGTCTAGCTGCCTGGCCGTTCATATGAAGAGACACAACGGTGACAAGAACTTTGCTTGCACGATTTGTGATCGATCTTTTGTTACAAGCACCGATCTAAAGGAGCATTTAGCAACGCATCCTGACGAGAAGATATTTAGTTGTAATTTATGTGCGAAGCAGTTCAATAGGGTAGCAGATCGTAATAGGCACATGAGAACTCATAATAATgtcatttcttaa
Protein Sequence: MELDFSKICRVCLNEGIMMSIFKVNVSKKMMACASVQVWQSDGLPAQICNKCSAKLHISFQFKKQCEKSDAKLRQYIAKIPNEQNQQPPQQQQQQQIPQQVQVTQQITEPTQGSCVYIECAPMLDISQEQKFDNFGNLTHTQAPPLTQINYNIQQPNHLHALGSYSLQAVGQVQVYNGTYTMPLQQMQPAGLMQNQVIAPTMQLQGQQQIIPQQQQPQIIQPQQIHELDPSKEKVKLIKAKRETNSNGAIKQCPTCNKQFATTTKLSRHMKTHSTDMPYKCKVCNKAFSHSGNYKIHLRMHTDERPFRCTVCGKGCRQAQDLEKHMRTHTGERPHQCKLCTKAFSTSSNLIAHIRTHTGERPYVCCVCQKAFCQSNELTKHMRTHTGEKSHICDICHKGFNGSSTLIVHRRSHTGERPYVCTVCNKGFAQSSCLAVHMKRHNGDKNFACTICDRSFVTSTDLKEHLATHPDEKIFSCNLCAKQFNRVADRNRHMRTHNNVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465226; iTF_01258388;
90% Identity: iTF_00465226; iTF_01258388;
80% Identity: -