Dpar001434.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
SCRT1
Assembly
GCA_958336345.1
Location
OY284475.1:11759327-11762824[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0011 0.1 14.5 0.1 1 23 295 317 295 317 0.95
2 12 6.2e-05 0.0057 18.5 1.6 1 23 325 347 325 347 0.99
3 12 3.9e-05 0.0036 19.1 0.4 2 23 355 376 354 376 0.97
4 12 6.4e-05 0.0059 18.4 1.2 1 23 382 404 382 404 0.98
5 12 0.00015 0.014 17.3 2.6 1 23 411 433 411 433 0.99
6 12 0.0053 0.49 12.4 1.7 1 23 439 461 439 461 0.96
7 12 2.6e-05 0.0024 19.6 0.1 1 23 467 489 467 489 0.98
8 12 1.6e-06 0.00014 23.5 1.2 1 23 495 518 495 518 0.96
9 12 2.3e-05 0.0021 19.8 0.6 1 23 524 547 524 547 0.96
10 12 3.9e-05 0.0036 19.1 2.1 1 23 553 575 553 575 0.99
11 12 0.00024 0.022 16.6 0.4 1 23 581 603 581 603 0.94
12 12 0.0016 0.14 14.0 0.1 1 23 609 633 609 633 0.94

Sequence Information

Coding Sequence
ATGACAAAGCTCGTTTGGCCGACGCAGACATGTTCGGAAAGACCTCTGAGCTTCATAATGTCGCAAGTGCTCGGGGCCGACGTAAAGGAAGACACCGTGCATTCGCTGCTCATTTGCAAGAAGTGCTTCAAATTGTTCGACGAAGTCGACGAGTTAGAGCAAAGGCTGGTCGACATTAAAGTCGAACTCGTCGGGAATTACAAGGAGTCGATTCAGAAGAGTAAAGACGGAGAGGAAACTGTCGAAGATGAAAGTGCGGATGTGCAAGACGAAGGTGTTAACAAAGATGCCAACAAAGAGAACGAAATACCCAAGAAGATTCTTGATATACCATCTTCAGATGATGACACACAAGttcagcaAATTACCACCGAAAGAACAAGCTTACAAGCGTTTGAAGACATCGAAATGGAACTGGTTAAAATCCATGGTGGAATAGATAAAGTCGATAGCCCAAAGAGTGTCAAGCCGCAGGAGCTAGATGAATCAAACCAGCCGTTTCATGGATTTGAGCCCGATTTAGATGATGGGGCAATCGACCATCCATCGGACTCGGATTATGAACCTCCTGGGCATGATAATACGGATGCTTTGCTACAAGCGGCAGCTGTCGCGGAGAAAAATTTAGTAGATAAGGTGCAGGTTAAAGTCGAGCCCGAGTTAGATAGCGACGACAAACCCaacattttaaaacgaaaaGCACCGCCGTCTAACAACAACCGAAAGTTTgtgccaaaaaaaattaaggaggAGTATTTGCCTGCGGTGGTAACGAGGGAAGGGAACATGTACACCTGCCTTCTGTGTGAGGGGGAGAAAACGGTTTGTGGCGAAGCGAAGGCCATAATGCAGCACATTAAGGTGGTGCACGATGCTCGCCTGTACATCTGTGACGTGTGCGGGGAGGACTTCCGTAAGCGAAACGAATTGTCAATGCATTTAGACGAGCACGTCGCGACGGAGGAAGGTGATTTTCAGTGTGAAGTATGCAATcgcattttcagtaatttaagaTTGTTTCGCATCCACAAACGAATGCATTATCCGCAGAATAAAGCTTGGACTTGCGAGACCTGTGGAAAACGTTACAGTTCGAAGAACTTGCTGGACGAGCACATAAACACACACACAGGTACTCGCCCGTACATTTGCCAGTCGTGTGGCAAAGACTTTGCCTCGAAGTATACCTTTAAGGCACACGAAAAGACGCACGAAGTCAGACCCAGACCTTTCCAATGCAGCCAGTGTAGTAAGTCGTTTTTAAGTCAACAAAATCTTACCCAACATGAACGTACTCATTCAGGAGTTAAAGAGTTTTCATGCCATTTATGCGAAAAACAGTTCGGTTCAATTCACAACTTAGAAGTGCACTCGATTGTACACACTGGTTACAAACCCTACATCTGTGGCCAGTGCGGAAAGGCATTCGCAAGAAAAGCGGAGATACGAGACCACGAACGCACCCACACCGGTGAAAGACCGTACCAGTGCGAGTTTTGTGGGGCGACTTTCAGCCAAAGATCCAACCTTCAATCTCACAAACGAGCCACACACTACGACGACAAAAGATACAAGTGCGAGCAATGCGGGAAGGGATTTAAGAGGAGACGGTTGTTGGATTATCACATCAAGGCAGCCCATACAGGCGAAAGGCCTTTCAAGTGTGACGTGTGCGAGGCCACTTTCGTTTACCCGGAGCACTTTAAGAAGCATAGGCGTATCCACACTGGCGAGAAACCGTTCTTGTGTGAGGTCTGCGGCAAGGCTTTTAACAGCCGGGACAACCGAAATGCTCATCGGTTCGTTCATTCCGACAAGAAGCCCTACGAATGCTTGGTGTGCGGGGCAGGGTTCATGAGGAAACCCCTGCTGTATCAACACATGCAAACGCAAGGGCATCTCAACGATACCATCGTTGTTAATCAACCGAGGCTCACCACCGACGATGATCAAATCATAACCGTAAATGCCGATGGTGAAATGGAAATAGTAGAAGGCGATGTAAGTCGGTTAGAACAGATAAACGATAACGACGAAGACACCACCGAAGAATCCAAGCTTTACATCGCCGATATAAAGCCTCACATGTTAGTAGATGGGAAAGTGTTTAGTAATTCTGAGGGGTCTCTCATAGTGGGTGAAAATCTAGATGATGACCAGACGGAAGACTCCGAAGCAGTTGAGCATATTATTATAGACGGACAGATACAGTTTGCCGATGATGAAGACGGCGAAGTGGAGGAAGTGGAGGGCGGTGAAGAGGGGGAAGATTCACACGTTCTGGCCACGGCGGAGGAGTACGAGAGGTTCATTACGAGTGCGGCCGTTGCGAACGGCGAAACGCAGATAATTCAAACCAAAGATGGGCCCATACAGTTAGTACAAGTGCGCATTCCCAATGATAACGGGGAAGAGGAGGACGCATGGTTGAAAATAGTGCCTGAATAG
Protein Sequence
MTKLVWPTQTCSERPLSFIMSQVLGADVKEDTVHSLLICKKCFKLFDEVDELEQRLVDIKVELVGNYKESIQKSKDGEETVEDESADVQDEGVNKDANKENEIPKKILDIPSSDDDTQVQQITTERTSLQAFEDIEMELVKIHGGIDKVDSPKSVKPQELDESNQPFHGFEPDLDDGAIDHPSDSDYEPPGHDNTDALLQAAAVAEKNLVDKVQVKVEPELDSDDKPNILKRKAPPSNNNRKFVPKKIKEEYLPAVVTREGNMYTCLLCEGEKTVCGEAKAIMQHIKVVHDARLYICDVCGEDFRKRNELSMHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWTCETCGKRYSSKNLLDEHINTHTGTRPYICQSCGKDFASKYTFKAHEKTHEVRPRPFQCSQCSKSFLSQQNLTQHERTHSGVKEFSCHLCEKQFGSIHNLEVHSIVHTGYKPYICGQCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCEQCGKGFKRRRLLDYHIKAAHTGERPFKCDVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQIITVNADGEMEIVEGDVSRLEQINDNDEDTTEESKLYIADIKPHMLVDGKVFSNSEGSLIVGENLDDDQTEDSEAVEHIIIDGQIQFADDEDGEVEEVEGGEEGEDSHVLATAEEYERFITSAAVANGETQIIQTKDGPIQLVQVRIPNDNGEEEDAWLKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00626417;
90% Identity
iTF_00465223; iTF_01258360;
80% Identity
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