Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:70395725-70398087[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.1e-05 0.001 20.8 3.3 2 23 228 249 227 249 0.97

2 10 1.6e-05 0.0015 20.3 0.6 1 23 256 278 256 278 0.98

3 10 1.2e-05 0.0011 20.7 0.2 2 23 285 306 284 306 0.95

4 10 5.3e-07 4.9e-05 25.0 1.5 1 23 312 334 312 334 0.98

5 10 0.00055 0.05 15.5 4.3 1 23 340 362 340 362 0.98

6 10 0.00016 0.015 17.2 0.1 1 23 368 390 368 390 0.96

7 10 6.9e-06 0.00064 21.5 0.4 1 23 396 418 396 418 0.99

8 10 1.1e-05 0.0011 20.8 1.2 1 23 424 448 424 448 0.97

9 10 3.7e-05 0.0034 19.2 1.6 1 23 454 476 454 476 0.98

10 10 7.6e-07 7e-05 24.5 2.5 1 23 482 504 482 504 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.1e-05	0.001	20.8	3.3	2	23	228	249	227	249	0.97
2	10	1.6e-05	0.0015	20.3	0.6	1	23	256	278	256	278	0.98
3	10	1.2e-05	0.0011	20.7	0.2	2	23	285	306	284	306	0.95
4	10	5.3e-07	4.9e-05	25.0	1.5	1	23	312	334	312	334	0.98
5	10	0.00055	0.05	15.5	4.3	1	23	340	362	340	362	0.98
6	10	0.00016	0.015	17.2	0.1	1	23	368	390	368	390	0.96
7	10	6.9e-06	0.00064	21.5	0.4	1	23	396	418	396	418	0.99
8	10	1.1e-05	0.0011	20.8	1.2	1	23	424	448	424	448	0.97
9	10	3.7e-05	0.0034	19.2	1.6	1	23	454	476	454	476	0.98
10	10	7.6e-07	7e-05	24.5	2.5	1	23	482	504	482	504	0.99

Sequence Information

Coding Sequence: ATGGATCAACACCTAGCAGAGTTCAACACGGTGATATTAACGTCGAACATAGAAAACCAGAGTATTTGCCGGACATGCCTCGCAGAAGGAAGCCAGACCAAATCAATTTTCGAGACTGAAATCCACAAGATGCTGCTGCAGTGCACAGCATTAAACATATACCTCGGTGACGGGTTACCGCTGCAGATCTGCATGAATTGCGTGGGCCAGGTGACGCAAGCGTACAACTTTAAGAACCAGGCCGAGTCGTGCGAGACGGCTCTTAAGCAATTTCTTGGCTTGAATAAGTCCAACGATGTGCTACTCGAAGCTTCCGAGTTGACCAAGTCGGATGACCTTTTGCTCCATTCTATCGACGTCGGTGTTAAGACGGATAATCCGATGTTTGAAGAGACCAAGGCGAAAATATCGATGGGTGCTTGCGAGTTAAAGATTAACGAAAAGTCCAGTGATATTTTACTTGAAGCGACCGAACTGGCACGGATTAATGAATTAGATCTGATTGAAGCGAACAGCGAAGttaaatcaaaaaatattcCCGCTTCTACTTCCCCTCCTCCTTCTTCGTTTAACGAAACTAAATCAAATGCGGTGAGTCCTGAGTCTATCCTCCCAGATTTTGCAGACGACGTTCAAGTCACATCAAGTAGGCAGAATGCAATCTGTCCCAAGGGTAAGCAGGTTTGCTTCATGTGCAACAAGAAGTTCAACTCGAAAAACACACTTAGAACACATATGCGAATGCACGGCACGAGCGAAAAGAAATACAATTGCACCGAGTGCGGCAAGCGATATTACGCTCAGAATGAACTGGTGATTCACATGagaaagcacaccggtgagcgACCCTTGGTCTGTGCGACATGTGGAAAGAGTTTCGCCGATCCCCGAAGCTTGACTAAACATAACAAGATTCACAGCGGTGAGAGGAATTTCGAATGTGAAATCTGTGATAAAAAGTTCATTCACGCCTACACCCTAAAAATACACCAGCGAATCCACACAGGCGAGAGACCGTTCGTTTGTAACGTTTGCGCACATTCTTGTTCCACTTCTACACAACTAACCCTGCACATGAGGTACCACACTCAAGAGAAACCGTATTTATGTTCGTTATGCCCCAAGGCATTTGCGAGTGGCAGCGGTTTAGCGACACACCAAATGACTCACACGGGGGAAAGAAAATACACTTGCTACATGTGCGGGAAAGGCTCTCGAACATCCACCGATTTAGCGGCCCATTTGAGAACGCACACGGGGGAGAAACCTTTCGAGTGTAAAATTCCAGGTTGCCCCAAGAAATACAAGACACACAGTCAACTCAGCGTCCACATCAGATCGCACACAGGTGAGAAACCACATCGGTGCACGGTTTGTTCCAAGGCCTTCGCCGACACGACACAACTCAAGAGTCACTTGAATATACACACCGGAATCAAGCCGTACGTTTGCTCGGTGTGTGGGTACAGGTTCACACAGTCTGGAACGTTGCACACTCACATGAAAACTCATAGGAAGAACAACGAATTAAAATGA
Protein Sequence: MDQHLAEFNTVILTSNIENQSICRTCLAEGSQTKSIFETEIHKMLLQCTALNIYLGDGLPLQICMNCVGQVTQAYNFKNQAESCETALKQFLGLNKSNDVLLEASELTKSDDLLLHSIDVGVKTDNPMFEETKAKISMGACELKINEKSSDILLEATELARINELDLIEANSEVKSKNIPASTSPPPSSFNETKSNAVSPESILPDFADDVQVTSSRQNAICPKGKQVCFMCNKKFNSKNTLRTHMRMHGTSEKKYNCTECGKRYYAQNELVIHMRKHTGERPLVCATCGKSFADPRSLTKHNKIHSGERNFECEICDKKFIHAYTLKIHQRIHTGERPFVCNVCAHSCSTSTQLTLHMRYHTQEKPYLCSLCPKAFASGSGLATHQMTHTGERKYTCYMCGKGSRTSTDLAAHLRTHTGEKPFECKIPGCPKKYKTHSQLSVHIRSHTGEKPHRCTVCSKAFADTTQLKSHLNIHTGIKPYVCSVCGYRFTQSGTLHTHMKTHRKNNELK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465212;
90% Identity: -
80% Identity: -