Dpar029533.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- Sall1
- Assembly
- GCA_958336345.1
- Location
- OY284480.1:19937493-19939115[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.002 0.19 13.7 0.7 2 22 52 72 51 75 0.90 2 12 0.0041 0.38 12.7 1.8 2 23 83 103 82 103 0.96 3 12 3.7e-05 0.0034 19.2 0.5 1 23 109 131 109 131 0.95 4 12 6.1e-06 0.00056 21.6 2.8 1 23 137 159 137 159 0.98 5 12 0.014 1.3 11.1 1.4 3 21 167 185 166 186 0.94 6 12 1.8e-05 0.0016 20.2 4.3 1 23 193 215 193 215 0.99 7 12 4.5e-06 0.00041 22.1 1.6 1 23 229 251 229 251 0.98 8 12 0.002 0.18 13.7 1.0 1 23 256 278 256 278 0.96 9 12 7.1e-07 6.5e-05 24.6 3.0 1 23 284 306 284 306 0.98 10 12 2.6e-06 0.00024 22.8 3.7 1 23 312 334 312 334 0.99 11 12 4.1e-07 3.8e-05 25.3 1.9 1 23 340 362 340 362 0.99 12 12 1.2e-05 0.0011 20.7 0.9 1 23 368 390 368 390 0.97
Sequence Information
- Coding Sequence
- ATGAAAGATGAAAATATAGTAACAACAGAAGATAGTGAAGATGAAGAAGGAAATTCTAGTATAAACTCACTTCCTAGTGACCTAAACACATCTGACTCTGAAGGAGATGAGGTGAAAGAAGtgaataaacaaattaagaacaAGTTGCCTTTAAGTTGTTCTAAATGCGGTGACGTTTTTCAAACTTCTGAGGAACTTAAAAAACACCGTAAAGAAGTAAGACATCCCAGAAAGAGAATTAAACTTTCATGCCACATATGTGGAAAACTGTATGGACGCCCTCATTTGGAAATTCACTTGCGTACACATACAAACGAAAAACCATTTATATGCGAGATATGTTCTAGACCATTCAGCacgaaaaataatttagataGACATTCCATGTTACATACTGGAGAAAGACCTTACGTGTGTCATATTTGTGGTAAAGGTTTTATACGATCTCGCACTTTAAGCGAACACGTGTGCACTCATACTGGGGAGAAACCGATTTTATGTGATGTTTGTGGTAAAGGTTTCGCTCACGATTATAGTTTCAATAATCACAAATGCATTGAACCTTCCACTAGAAGATTTAAATGCAAATACTGTGACATGACATTCAATCGAATTTTTGAATATCGCAAACATATGCAGCGCCATCAATTTACTGATGGAAAATTAGATCAACAATTAAAGGAATTTCGGTGCGTCTTATGTCAAAAAGTATTCAATTCTAGATACACATTAAAAACGCACATGCTAATTCACGGTGAAAAAACTTACTTATGCAGCGAGTGTGGTAAAGGATTTCACGTTCACGCGGGATTACTGGCTCACAAGAAAGTGCACACTGGAGAAAAACCATATACGTGTACAGAATGCGGCAAACGTTTTACACATTTCGGAACCCTAAAGACGCATATGTTGGTACATAATGGCCAAAGACCTTATACTtgtgaaatttgtttaaaaacgtTTAAACAGAAGAATCATTTAAAAGATCATGTAAGGATGCATAGTGGAGAGAAACCTTACAAGTGTTCAATATGCGACAAACGCTATACCTCGAAAGGAACACTAAATTATCACATTCGAAGTCATACTGGTGAAACCCCCCACGTTTGTGATGTTTGTGGACGAGGATTTTATGATCCAAGTAGCATGAAGAAACATAAAAGAGGCCatggtaatataaaaaacgtTGATGAAACAAGCTCAGTGAAATCTTAA
- Protein Sequence
- MKDENIVTTEDSEDEEGNSSINSLPSDLNTSDSEGDEVKEVNKQIKNKLPLSCSKCGDVFQTSEELKKHRKEVRHPRKRIKLSCHICGKLYGRPHLEIHLRTHTNEKPFICEICSRPFSTKNNLDRHSMLHTGERPYVCHICGKGFIRSRTLSEHVCTHTGEKPILCDVCGKGFAHDYSFNNHKCIEPSTRRFKCKYCDMTFNRIFEYRKHMQRHQFTDGKLDQQLKEFRCVLCQKVFNSRYTLKTHMLIHGEKTYLCSECGKGFHVHAGLLAHKKVHTGEKPYTCTECGKRFTHFGTLKTHMLVHNGQRPYTCEICLKTFKQKNHLKDHVRMHSGEKPYKCSICDKRYTSKGTLNYHIRSHTGETPHVCDVCGRGFYDPSSMKKHKRGHGNIKNVDETSSVKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465209;
- 90% Identity
- iTF_00465209;
- 80% Identity
- -