Dpar012766.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284477.1:8209365-8210770[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00093 0.086 14.8 2.4 1 23 108 130 108 130 0.97 2 11 0.0012 0.11 14.5 3.8 1 23 136 158 136 158 0.98 3 11 2.2e-05 0.002 19.9 1.6 1 23 164 186 164 186 0.98 4 11 6.9e-06 0.00063 21.5 0.1 1 23 192 214 192 214 0.99 5 11 4.9e-06 0.00046 21.9 0.9 1 23 220 242 220 242 0.98 6 11 5.7e-07 5.3e-05 24.9 2.6 1 23 248 271 248 271 0.98 7 11 2.2e-05 0.002 19.9 0.6 1 23 277 299 277 299 0.98 8 11 2e-05 0.0018 20.0 0.7 1 23 308 330 308 330 0.97 9 11 1.2e-05 0.0011 20.7 3.9 1 23 336 358 336 358 0.99 10 11 2.5e-06 0.00023 22.8 0.8 3 23 366 386 365 386 0.99 11 11 3.5e-07 3.2e-05 25.5 0.3 1 23 392 414 392 414 0.99
Sequence Information
- Coding Sequence
- ATGGAAACCCTAGAAGACATTGAGACGGAAAAAGTGTGCCGAGTGTGTTTGAAAATCGAAGCGGACATGAAGCCCCTCTTCGGGGACACGGACCTGGCGAACCTGCTGCGAGCCTGCACATCCTTGAAGGTCGACCCAGACGACGGCCTGCCTCAGCTTCTGTGCGACTCCTGTGCTTCCGAAGTGACCAGATGGCAGGCCTTAAAACTGCGGGCGTTGCAAAGCGACGCGTTCCTGCGCAGAGCCTTGCAGGACCTCGATTGCAACGACGCTCAGTCGAGCGTTTGTGGAGGAGTGAACGAGTCGAACACCGATGGGGAATTCGAGTGCGCGATATGCAAGAAGCGGGTCAAAACCGTGCACTCGCTGAGGAGGCACTCGAAGATCCACTCGGGGATTAAACCCCACAAGTGCAAGTTTTGTAACAGGTCGTTCCTCGAAGCCGGTAATTTAAGCAAGCACTTAAGGAAGCACGCGAACGATAAGAAGCACCAGTGTAACGAGTGCGGGCTTCGCTTTTACGAACGCAACAAATTGATTATTCACATAAGGACGCATACGGGAGAGAAGCCCTACAGCTGTGAGATGTGCTCGAGGCCCTTCGCTACGCCTGCGCAAGTGCAAGTCCACATGAAGACCCATACGGGCGAGAGGCCTTTCTCGTGCCAGATTTGCTGGAAGTCTTTCCCGTACAGCAGTTCCTTGGAGACCCACAAGAAGATCCATCGCGGGGAGAAGTCCCACACGTGCCCCGACTGCAATCGTCGCTTCTCACAGAAGGTCAACCTCGACAGTCACATTCGTACCAAGCACACGCACGAGTGCCCCTTTATGTGCAGCGATTGCGGGAGCGCGTACCCCACCAAGGACAGACTCAAGAACCACATGCGGCAGCACACGGGCGAGCAGAGGCCGTTCAAGTTCGCCTGTTCCGCCTGCGAGAAGTGTTTTAGGACCCCGGCGGAGCTGCGCATACATGGCAGGACGCACACGGACGAGAGGCCTTACCAGTGCGATTTCTGCGGGAAGAAGTTTCGGGCGTCCTCGCACATGACTTCGCACCGGCGGATTCACACGGGGGAGAGAAACCACGGGTGTCGGTATTGCGGGAAGGCGTTTCGTGAGTCGTCCACCCTCAAGACACACCTGCGGATTCACACGGGTGAGAGACCCTATCGCTGTCAAGTTTGTGGTGCGAGTTTCGCACAGAGTAACACGCTCAACACACACATGAGAGTTCACACTAATTCTCGTTCTCGTAATCGTAATGTGAAAGTTACTTGA
- Protein Sequence
- METLEDIETEKVCRVCLKIEADMKPLFGDTDLANLLRACTSLKVDPDDGLPQLLCDSCASEVTRWQALKLRALQSDAFLRRALQDLDCNDAQSSVCGGVNESNTDGEFECAICKKRVKTVHSLRRHSKIHSGIKPHKCKFCNRSFLEAGNLSKHLRKHANDKKHQCNECGLRFYERNKLIIHIRTHTGEKPYSCEMCSRPFATPAQVQVHMKTHTGERPFSCQICWKSFPYSSSLETHKKIHRGEKSHTCPDCNRRFSQKVNLDSHIRTKHTHECPFMCSDCGSAYPTKDRLKNHMRQHTGEQRPFKFACSACEKCFRTPAELRIHGRTHTDERPYQCDFCGKKFRASSHMTSHRRIHTGERNHGCRYCGKAFRESSTLKTHLRIHTGERPYRCQVCGASFAQSNTLNTHMRVHTNSRSRNRNVKVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00465203; iTF_01258338;
- 90% Identity
- iTF_00465203;
- 80% Identity
- -