Dpar001053.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8047705-8063378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00022 0.02 16.7 0.1 1 23 48 70 48 70 0.95 2 22 0.0038 0.35 12.8 3.0 3 23 78 99 76 99 0.97 3 22 4.2 3.9e+02 3.3 0.4 3 23 108 128 106 128 0.95 4 22 7.8e-06 0.00071 21.3 1.4 1 23 134 156 134 156 0.97 5 22 0.0024 0.22 13.5 7.5 1 23 162 184 162 184 0.97 6 22 5.6e-05 0.0051 18.6 4.2 1 21 190 210 190 211 0.95 7 22 1.3e-05 0.0012 20.6 1.7 1 23 224 246 224 246 0.99 8 22 0.22 20 7.3 1.5 1 23 252 274 252 274 0.96 9 22 0.0018 0.16 13.9 2.1 3 23 282 302 280 302 0.97 10 22 0.00016 0.014 17.2 1.4 1 23 308 330 308 330 0.98 11 22 8.8e-05 0.0081 18.0 1.7 1 23 336 358 336 358 0.98 12 22 0.00066 0.06 15.2 1.5 2 23 365 386 364 386 0.96 13 22 0.01 0.96 11.5 2.6 1 23 392 411 392 411 0.97 14 22 0.002 0.19 13.7 9.8 1 23 417 439 417 439 0.97 15 22 0.00092 0.085 14.8 2.0 1 23 445 467 445 467 0.98 16 22 0.22 20 7.3 2.1 1 23 522 544 522 544 0.96 17 22 0.0021 0.19 13.7 2.5 1 23 550 572 550 572 0.98 18 22 0.063 5.8 9.0 1.5 1 23 578 600 578 600 0.97 19 22 0.00011 0.01 17.7 3.5 1 23 606 628 606 628 0.97 20 22 3.9e-05 0.0036 19.1 2.0 1 23 634 656 634 656 0.98 21 22 2.7e-05 0.0025 19.6 0.9 1 23 662 684 662 684 0.98 22 22 0.25 23 7.1 1.8 3 23 692 712 690 712 0.97
Sequence Information
- Coding Sequence
- ATGGTATTAACCGTTCACATAATTTTAGTCAACCTCGCGGACAAATACGGTCACCACAAAGAACCATCCGGGTCCGAACAAATAATCGAGGACGCGCGGTACCAATGGAATTGCGAATCTAAAATTCTAAGCGAAAGCACATTTAAATGTGTCATTTGTGATGCCGAGTATAAACGCCCTGGATATTTGCGGAGGCATTTGGTGGCACATCCCGACGAGAAGCCATTcggttgtgacctttgcgatcaCAAGTTTCGAAAACGGGCAGacttgaaacagcacaagttaacaACGCACAGAAACCAGAGGACaacgttcggttgtgatctttgcgattataaaagccaATTGCTCGGAAACGTGAAGAAGCAcaagttaatacacaccggcgagaggcCGTTCGCCTGCGAACTTTGCGATCGCAAATTCCGACGACGCGGAGATTTGAAGAAGCACACGTTATCGCATACCGGCGAGAGACCGTTTTGTTGTGATATTTGTGGTTACAGGTGTCGGCACGCCGGACATTTGAATGCTCATAAGTTAACACACACCGATGTGAAGCCATTCAAGTGTGGCCTTTGTGACTACAAATTTCGACAAAAAAGCACCTTGAAGAAGCACATATGCCGCCGACTTTCAAAATCTAAAACTCTCAAGAAAGAAACCTTCAAGTGCGAAACGTGCGATTCCAATTTTAGAACTCCCGGAAGTTTTCGGAAGCACATGCTGacacataccggcgagaaaccgttcagttgcgacctttgcgattataaatgccgagcaAGCCAACGGTTGAAGGAGCACGCGTTAATacacacggacgagaagccTTTCGgatgtgacctttgcgattacaaatgtcgacaGAAGGCGGCGTTAAAGAAGCACGTGctgaagcacaccggcgagagaCCGTTCACGTGCGAACTTTGCGGTCATAGAAGCCCACACGCCGGAAGCTTAAAAGCTCATATGTCGACACACTCGGACGAGAGGCCGTTCAGTTGCGACGTCTGCGATCACAAGTTCCGACGAGGAGATGCCTTGAAAATGCACATGCTAagacataccggcgagaagccgttaaGTTGCActgtttgcgattataaatgccgaggaCCCGGCAATTTGAAGCTGCACATGACCAAGCACACCGGCGAGGAGCGGTTTACTTGTGAGCTATGCGATCGCAAATTTCGTGACTTGAAAAAGCACATGTTGAcgcacaccggtgagaaaccgTTTTGTTGTCACATCTGTGGCTATAAATGTCGACACGCCGGACACTTGAATTCTCACATGTTGATACACGGCGATGTGAAGCCGTACAGATGCAGCCTTTGTGATAGCAAATTTCGATACAGCAACGTCCTGAAGAAGCATATGTTACTGCATACCGGCGAGATGCCGTACAGCTGCGATTTCTGTGATTTCAAGTGCCGAAGATACCAACGAATTTCGAAACGTAATGCCTTTAAATGTGAAGCATCCGATTCCAAGATTAAATCTCCTGGACGCTTGGGGAAGCTTGTACTAACACGCACCGACGAGAAACGGTTCAGTTGCAATATTTGCGGTTACAAATGCTGGGAAAATAAACGGTTGAAACAGCACCTGTTGATACACACAGACGAGAAGCCTTTCGAATGTGACCTTTGCGAGTACAAATGCCGACAAGGATCGGAGCTGAGGAAGCACGTGCAAAGGCACACCGGTGAGAGACGATTTATGTGCGACTTTTGTGGTCATAAATTCCTGCGCCCcggagatttaaaatttcacatatTAACACACACGGGCGAGAGGCCGTTTTTCTGTAACGTTTGCGACTGCAAATTCCGACGAGTAGAGGCTTTGAAAAAACACAtgttaaggcacaccggcgagaagccgttcagttgtaccgtttgcgattataaatgccgaggaTCCAGCAATTTGAAACAACATATGGCcgtacacaccggcgagaagccgttcagttgtgaagTCTGCGACGGCAAATTTCGACAACGCGGagatttgaaacagcacatgttcacgcacaccggcgagaagccgttcggttgtgatctttgcgattacaaatgcacTCGTCCCGGAATATTGAAGCAGCACAAGCTGAAACACACCGGCGATACAAAGTGA
- Protein Sequence
- MVLTVHIILVNLADKYGHHKEPSGSEQIIEDARYQWNCESKILSESTFKCVICDAEYKRPGYLRRHLVAHPDEKPFGCDLCDHKFRKRADLKQHKLTTHRNQRTTFGCDLCDYKSQLLGNVKKHKLIHTGERPFACELCDRKFRRRGDLKKHTLSHTGERPFCCDICGYRCRHAGHLNAHKLTHTDVKPFKCGLCDYKFRQKSTLKKHICRRLSKSKTLKKETFKCETCDSNFRTPGSFRKHMLTHTGEKPFSCDLCDYKCRASQRLKEHALIHTDEKPFGCDLCDYKCRQKAALKKHVLKHTGERPFTCELCGHRSPHAGSLKAHMSTHSDERPFSCDVCDHKFRRGDALKMHMLRHTGEKPLSCTVCDYKCRGPGNLKLHMTKHTGEERFTCELCDRKFRDLKKHMLTHTGEKPFCCHICGYKCRHAGHLNSHMLIHGDVKPYRCSLCDSKFRYSNVLKKHMLLHTGEMPYSCDFCDFKCRRYQRISKRNAFKCEASDSKIKSPGRLGKLVLTRTDEKRFSCNICGYKCWENKRLKQHLLIHTDEKPFECDLCEYKCRQGSELRKHVQRHTGERRFMCDFCGHKFLRPGDLKFHILTHTGERPFFCNVCDCKFRRVEALKKHMLRHTGEKPFSCTVCDYKCRGSSNLKQHMAVHTGEKPFSCEVCDGKFRQRGDLKQHMFTHTGEKPFGCDLCDYKCTRPGILKQHKLKHTGDTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -