Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284477.1:420261-427013[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00028 0.026 16.4 3.7 1 23 173 195 173 195 0.98

2 12 0.00011 0.01 17.7 2.4 1 23 201 223 201 223 0.96

3 12 0.0012 0.11 14.4 0.5 2 23 259 280 258 280 0.97

4 12 2.9e-06 0.00026 22.7 5.1 2 23 292 313 291 313 0.97

5 12 6.7e-06 0.00061 21.5 0.4 1 23 319 341 319 341 0.96

6 12 9.4e-07 8.7e-05 24.2 1.8 1 23 347 369 347 369 0.98

7 12 2.3e-05 0.0021 19.8 0.7 1 23 375 397 375 397 0.95

8 12 2e-05 0.0018 20.0 1.2 1 23 403 425 403 425 0.98

9 12 1.2e-06 0.00011 23.8 1.9 1 23 431 453 431 453 0.98

10 12 0.00014 0.013 17.4 0.7 1 23 459 481 459 481 0.99

11 12 7.8e-07 7.2e-05 24.4 1.0 1 23 487 509 487 509 0.98

12 12 1.4e-06 0.00013 23.7 0.9 1 23 515 537 515 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00028	0.026	16.4	3.7	1	23	173	195	173	195	0.98
2	12	0.00011	0.01	17.7	2.4	1	23	201	223	201	223	0.96
3	12	0.0012	0.11	14.4	0.5	2	23	259	280	258	280	0.97
4	12	2.9e-06	0.00026	22.7	5.1	2	23	292	313	291	313	0.97
5	12	6.7e-06	0.00061	21.5	0.4	1	23	319	341	319	341	0.96
6	12	9.4e-07	8.7e-05	24.2	1.8	1	23	347	369	347	369	0.98
7	12	2.3e-05	0.0021	19.8	0.7	1	23	375	397	375	397	0.95
8	12	2e-05	0.0018	20.0	1.2	1	23	403	425	403	425	0.98
9	12	1.2e-06	0.00011	23.8	1.9	1	23	431	453	431	453	0.98
10	12	0.00014	0.013	17.4	0.7	1	23	459	481	459	481	0.99
11	12	7.8e-07	7.2e-05	24.4	1.0	1	23	487	509	487	509	0.98
12	12	1.4e-06	0.00013	23.7	0.9	1	23	515	537	515	537	0.98

Sequence Information

Coding Sequence: ATGGAAGAGAGCGTCTTGACGAATGTATGTCGAGCGTGTTTAACCGTAGAGGGCGAATTCCAATCAGTTTTTGTGCACGACGACTCCACCGGCCTAAACATACACCTAGCCGAAATGATAATGGCCTACGCCGCCGTGCAGATAACGTTCGGAGACGGCCTGCCCGAACAGATATGTCTGTTATGCGCGAGAAAGGCGGCCGATTTTTACCTCTTCAAGCAACAGTGCGAACAATCGGACGCCGCATTAAGGGAACGTCTGGGCAAATCGCCCCTCGCCAAAGCGTTCATCGCCGACGAACTCCCCGGGGATTTCGAAGTGGACGTGAGTGTCAGTGGGGATATGATCATAAAACCGAGTATGGTCGTGAAGCCCGACATGATTGTAAAGCCGGAAGAGAGCGGCAAGGTTGAACAGAAACTCGAGGCCGCCAACTTCGGCGATACGATAGACGACATGAAACTCTTAGGCATCGATAGTGTAGATAATAGTGAATTAGATAATGTAGTGCAAACGTTTGAGTGTGATCTCTGCTTAAAGAAGTTCACCCGCCTCACTCACTTAGATCGGCACAGAAAGGTTCACGAGGTGCCTAAACTGTTCCCGTGCGACATCTGCCAGAAAGTGTTCGTGCACCTCGACCTGCTGCACAGGCACAAGCTCAACCACGAAATCAAACTCGAGGAGCAGAAGGTCGAGTTCGACACGATCATCGACCAGGACATGGTGGCGGACGACCTCGTCGACATAAAATACGAAGAGGACGACTTCATGAGGTGCTCGGTGTGCAATTTAACGTTCGGGGACCAGCAGCAGTTCGTGAAGCACGTCGACACGCATCAGATATGCAAGGAGAAGGAACTCGGCAACATCGAGTGCAAGGTGTGCCACAAGATGTTCTCGAAGAACTCTCACCTGACGAGGCACTTGAAGATACACGACGCCATCAAGCCTCACGCCTGTAAGTTGTGCAACAAGGGCTTCGCCCGTGCCGAACAGTTGGTCAATCACATGAACGTGCACTCGGGTATTAAACCGCACGTGTGTCAGATTTGCTCCAAAGGTTTTAATCAAATATCGAACCTCAAAGACCACATGAGGACGCACAACGGGGAGAAGCCGTTCTTGTGCTCGACTTGCGGGAAGGGCTTCAACCAGTTGGGAAATCTGCGCCAGCACACGATAAGGCACAGCGGAATCAAAGCCCACGTCTGTAGCATCTGCGGCAACGGCTTTGCTAGCAAAGGTGAATTATGCGCACATCTCAGGAAACACACAGGTGCGCGTCCTTTCGTCTGCCCCGTCTGCAACCACGGCTTCACGACCTCGAGCTCGCTCACGAAGCACAAGCGCATACATTCCGGTGAGAAGCCCTACGAGTGCGAGGTGTGCAAAATGCGGTTCTCTCGGTCCGGAATCCTGGCCCGTCACAAACggacgcacaccggcgagaagccctACGTTTGTAAATACTGCACGAAAGCGTTCTCGCAGTCGAACGACCTCAGCTCTCACCTGCgcatacacaccggcgagaagccgttcataTGTGATAACTGCGGGCAGGCGTTCCGGCAGAGTTCCGCGCTGAAGACGCACAAGAAGACCCACATGGACAGGAGTATACTCAGCTCGAGGGTTGTTATGGGTATGGTGACGACgtcgtttttaaataatttacaataa
Protein Sequence: MEESVLTNVCRACLTVEGEFQSVFVHDDSTGLNIHLAEMIMAYAAVQITFGDGLPEQICLLCARKAADFYLFKQQCEQSDAALRERLGKSPLAKAFIADELPGDFEVDVSVSGDMIIKPSMVVKPDMIVKPEESGKVEQKLEAANFGDTIDDMKLLGIDSVDNSELDNVVQTFECDLCLKKFTRLTHLDRHRKVHEVPKLFPCDICQKVFVHLDLLHRHKLNHEIKLEEQKVEFDTIIDQDMVADDLVDIKYEEDDFMRCSVCNLTFGDQQQFVKHVDTHQICKEKELGNIECKVCHKMFSKNSHLTRHLKIHDAIKPHACKLCNKGFARAEQLVNHMNVHSGIKPHVCQICSKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHVCSICGNGFASKGELCAHLRKHTGARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECEVCKMRFSRSGILARHKRTHTGEKPYVCKYCTKAFSQSNDLSSHLRIHTGEKPFICDNCGQAFRQSSALKTHKKTHMDRSILSSRVVMGMVTTSFLNNLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465193; iTF_01258319;
90% Identity: iTF_00465193;
80% Identity: -