Dpar000839.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:5853725-5863146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.00024 0.022 16.6 1.3 1 23 13 35 13 35 0.98 2 32 0.99 91 5.2 1.6 3 23 43 63 41 63 0.94 3 32 0.00013 0.012 17.5 3.1 1 23 69 91 69 91 0.99 4 32 0.19 18 7.5 3.8 1 23 97 119 97 119 0.98 5 32 0.023 2.1 10.4 0.8 1 23 125 147 125 147 0.97 6 32 0.0003 0.028 16.3 2.2 1 23 153 175 153 175 0.98 7 32 0.0016 0.14 14.1 3.3 3 23 183 203 181 203 0.98 8 32 0.0014 0.13 14.2 3.3 1 23 209 231 209 231 0.97 9 32 0.018 1.6 10.7 0.5 1 23 237 259 237 259 0.98 10 32 0.00072 0.066 15.1 1.3 1 23 265 287 265 287 0.97 11 32 0.13 12 8.0 3.2 1 23 293 315 293 315 0.97 12 32 0.012 1.1 11.2 2.0 1 23 321 343 321 343 0.98 13 32 0.0046 0.43 12.6 1.6 1 20 349 368 349 369 0.96 14 32 0.0027 0.25 13.3 0.9 3 23 381 401 380 401 0.97 15 32 0.00095 0.088 14.7 1.4 1 23 407 429 407 429 0.96 16 32 0.06 5.6 9.1 1.7 2 23 436 457 435 457 0.96 17 32 0.0012 0.11 14.4 0.5 1 23 463 485 463 485 0.98 18 32 0.00033 0.03 16.2 5.2 1 23 491 513 491 513 0.98 19 32 0.021 2 10.5 5.2 1 23 519 541 519 541 0.98 20 32 0.68 63 5.7 5.4 1 23 547 569 547 569 0.95 21 32 0.00016 0.015 17.1 3.5 1 23 575 597 575 597 0.98 22 32 5e-05 0.0046 18.8 0.6 1 23 603 625 603 625 0.97 23 32 0.081 7.5 8.6 2.0 3 23 633 653 633 653 0.99 24 32 0.0048 0.44 12.5 3.9 1 23 659 681 659 681 0.98 25 32 9 8.3e+02 2.2 3.5 2 23 688 709 687 709 0.93 26 32 0.0012 0.12 14.4 0.8 1 23 737 759 737 759 0.98 27 32 0.0003 0.028 16.3 0.9 1 23 765 787 765 787 0.97 28 32 0.00078 0.072 15.0 1.2 3 23 795 815 793 815 0.98 29 32 0.13 12 8.0 5.0 2 23 822 843 821 843 0.97 30 32 0.0027 0.25 13.3 4.6 1 23 849 871 849 871 0.99 31 32 0.018 1.7 10.7 4.3 1 23 877 899 877 899 0.98 32 32 0.15 14 7.8 2.2 2 23 962 983 962 983 0.96
Sequence Information
- Coding Sequence
- ATGATAATCGAAACTAGCGTTCTGGGCCAAAGCATATTCGAATGTCAGCTGTGCGGCTCTAAATTTAAAACTCGCGGGTACATGCGCAAGCACATCCAgatacataccggcgagaaaccgttcggctgtgatctttgcgaatACAAGTGCCGAAATGTCGGAAATCTGAAACTGCACTCGTTCatacataccggcgagaagccgttccgCTGCGAACATTGCGATTACAAGACTCGACAAGTCGGGAACCTGAAGCGGCACTTGTTAACGCACAccgatgagaagccgttcacttgCGACCGGTGCGCTTATAAAGGCCGACATTTCTGGAAGCTGAAGCGtcacatgttaacgcacaccgTAGAGAAGCCGTATTTCTGCGGCCTTTGCGACTACAAGTGCCGCGAAGCCGTGAGTTTGAAAGggcacatgttaatacacaccggcgagaggcCGTTCACTTGTAAAGTTTGCGGCTACGGATGCCGAAACGCCGGAAAACTAAAGCAACACACCCTAACACACACCGATGAAAAGCCGTACGGTTGTGATCTCTGCGGTTACAGGTGCCaccaatccggaaatttgaaaagccacatgttaacgcacacaGACGAGAAGCCATTTTGTTGTGAACTCTGCGATTATAAGACTCGACAGGCTACAAACTTGAAACGGCACAGATTAAtccacaccggcgagaagccgtttagttgtgactTGTGTGATTATAAAGGCCGAGAACTCGTCAAGTTGAAGAGCCACATGCTaacgcacaccgacgagaaaccatTCTTCTGTGGcatttgcgattacaagtgccgcGAAGCCgcaagtttgaaacagcacatgaTAACACACACGGGCGAGACAccatttagttgtgatctttgcgattacaaatgccaaaGCTCGAGAAAGTTGAGGCAGCATGCGGTAACGCACagcgacgagaaaccgttcagttgcgatctttgcgactaCAAGTGCCAGCAAGCCGGAAGTTTCAAAGGtcacatgttaacgcacaccgATGAGAAGCCCTTCCGTTGTGAACACTGCGATTACAAAAGCCGTCAGATCGCAAATTTAAAGCGGCACTTATTCGACGAGCCCCAATCGAACAAAACAACATCCGACTGCCACATATGTGGTTCTAAATTTAAGACACCGGGGTATATACAGAAGCATCTTCTGCTACATACGGGCGAAAAGCCGTTCAGGTGTGCTTATTGCGATTACACGTGTCGACAAGCCGGAGCTCTGAAACAGCACGTGTttatacacaccggcgagaaaccgctTTCGTGCGAACATTGCAGCTACAAGACCCGACAAGTCGGAAATTTGAAACTGCACGCGTtgaaacacaccggcgagaaatcGTTCCGTTGTAATTTGTGCGACTACAAGAGCCGAGAGGCCGGAACTCTGAAGCAGCACATGTTAATTCACACggatgagaagccgttcagctgtgattattgcgattacaaatgccgacgtGCTGGGTGTTTGAAGAGGCACATGttgatacacaccggcgagaagccgttcagctgtgatctttgcaattTCAAGTGCCGATATTCGGTAATGTTAAAAAAGCACATGACGAGGCATAGCGATGAGAAACTATTCTGCTGTGAGATTTGCAATTACAAGTGCGGACACGCCAAAAGTTTGAAACTGCACGTGTCGGCGCACGACGACGAGAAGCAGTTCCGCTGTGAATATTGCGGTTACATGACTCGACATACCGTAAATTTTAAAcggcacatgttaatacacaccggcgaaaaaCCGTACATCTGTAGTCTTTGCGACTACAAGTTCCGAGAACCGGGGAAGTTGAAACGTCACATGTTATTGcataccgacgagaagccgttaggctgtgatctttgcgattataaatgtcggcaGGTCGGCAGTTTGAAATTGCACTTGTTGAGGCACGTCGACGCGATACCGTTTAATTGTGGCctgtgcgattataaatgtcggcaGACTGCACATTTGAAAGAGCATATACTGACGCACCCCGGCGAGAAGCTGCTTTGTTGTGGtctctgcgattacaagtgtcAAGAAGTCACAAAGTTAAAATGGCACATGGTGAAACATGCCGGCGAAATGtcgttcagttgtgatttttGTGATTACAGATGTGAAAATTCCCGACCTAAGAGTCGCGCGAAGAAAACATTCCAGTGCCGAATATGCGACTCTAAATTTAAAAGCCAAGGACGTTTGCGCGAACACGTTATGATACATTCGGGCGAGGCACCCTTCTACTGTAACTTTTGCCGTATCAAGTTTAGACAGGCTGACGCTTTGAAAAAGCACGTGTTGAttcacaccgacgagaaaccgttcggcTGTAATCTTTGCGACTACAAATCCCGCGTATCGCAAAACTTGAAACGTCACATGCTaacgcacaccgacgagaagccgttacGCTGCGGTCAATGCGATTACAGGTGCAAAGAAAACAGACACATGAAGCTGCACATGTTGatgcacaccgacgagaagccgttccgCTGTGAGcgttgcgattacaagtgcggGCAAGTCGGACATTTGAGGCGGCACATGTTAActcacaccggcgagaaaccgttcgtctgtaatctctgcgattataaatgccgagaatCGGCAACGTTGAAGCATCACGtgttaaaacacaccgacgagaacTCGTTCagctgtggtctttgcgattacaagtgtgGAGAAGCCAAGCGCATGAAACAACACGTGTCAGCGCACATCGAGGAGAAGCCATTCTGCTGTGAACATTGCGATTATAAAAACCTAAAATTCGGACAGTTGAAGCGGCACATGTTAACCCACACGGGCAAGAAACCGCGTTCTTGCGATttgtgcgattataaatgctcgGCGCCCTCGAAGATGAAAAGGCACAAGTTGATACACACCAaggagaagccgtttagttCGGGGTACACACCAACACTCCGGAGCGCGCGATTGGAACCCGGCGTCCTAACGTGCGAGATTAGAACGCCACAAGATTGGAATGTCATCGTCCACAAACGCAACAAAAATCTTACAGTGCAATCCTGCGCTTTTGAACGTGGAAGGAAAGAACGTACGTTAATGGACCAAAAACGCATACTTTCCTACAGtGACAGGCGTGCGTGTGAAATGGAGTTCGAAACGAAACACAAGAAAAGACGTGTTATAAGTGTATGTGCATTAATGATGGCTGTAAAATTTCAAGAAggtaataataagaaaaaacgtTCACGATGGTGTAAATCCTGGATACAAGAAAGAAATACATTTAGCCACGTTTCTTTATTGCGCGAACTTAGAGGTAACTGTCCGGATGATTACAGAAATTATCTTAGAATGAATGGTGATTTATTTGATCATCTTCTTGCTTTATTAACACCTCACCTAACAAAACAAGATACTGTTATGAGAAATGCCATTCCTTCTGATGAAAGGTTGATAGCTACTTTAAGATATTTGGCTACAGGTCGAAGTTTCCAAGATTTAAAGTATTCAACAGCAATTTCTCCACAGGCTTTGGGTTATATAATTCCAGAAACTTGTAAGATAATATTTGAGACACTAAGGAATGAATATTTAAAGTTTCCAACCACTAAAGAAGAATGGTTACAAATTGCAGAAGGTTTTGCAAAAAGGTGGCAGTTTATAAATTGTGGTGGAGCTCTTGATGGCAAACATGTTCGTATTATACCACCACCACATTCTGGAGCTTTGTATTATAACTACAAACATTTCTATAGCGTAGTTTTAATGGCGTTGGTAGATTGTAACTATGAGTTTATTTTTGTCGACGTTGGAAAAAATGGACGCTTATCTGACGGAGCAGTCATAGAATATACAGAATTTTCtcgcaaattaaaacaaagacaGTTAAATTTGCCAAGTAATCGTGAAACTGtggcaaatttgaattttgtgtttCTTGGTGACGAGGCTTTTGCTTTGACTGACAATTTTCTTAAACCGTATCCACAAGCAGAACTTAATTACGACAAAAGAATTTTCAACTATAGACTCTCGCGTGCGAGAAATGTTGTAGAGAATACGTTTGGAATAATTGCATCCAGGTTCAGAATTCTACATACAGCTATTAACATCACTAATgtgcaaaatataaattatgttatttTGGCCATTTGTACATTACATAACTTTTTACGAAGACGTAGCAAGGGCTACATTACGCCTACAATCACTGACACAGAAAATAGTAATAGCTGCAATAGTACGCAATTTGGTGAATGGCGAAAAGAAACCGCGGAATTAACGAATTTACAACGTGTGATTTCAAGAACTGCTACTAACACTGCAAAACAAAATAGAGACAATTATAAAACGTATTTCATGTCGGAAGGAAGTGTGCCCTGGCAGCAGAGTATGATAAACGCGGGAAAAGCGTGA
- Protein Sequence
- MIIETSVLGQSIFECQLCGSKFKTRGYMRKHIQIHTGEKPFGCDLCEYKCRNVGNLKLHSFIHTGEKPFRCEHCDYKTRQVGNLKRHLLTHTDEKPFTCDRCAYKGRHFWKLKRHMLTHTVEKPYFCGLCDYKCREAVSLKGHMLIHTGERPFTCKVCGYGCRNAGKLKQHTLTHTDEKPYGCDLCGYRCHQSGNLKSHMLTHTDEKPFCCELCDYKTRQATNLKRHRLIHTGEKPFSCDLCDYKGRELVKLKSHMLTHTDEKPFFCGICDYKCREAASLKQHMITHTGETPFSCDLCDYKCQSSRKLRQHAVTHSDEKPFSCDLCDYKCQQAGSFKGHMLTHTDEKPFRCEHCDYKSRQIANLKRHLFDEPQSNKTTSDCHICGSKFKTPGYIQKHLLLHTGEKPFRCAYCDYTCRQAGALKQHVFIHTGEKPLSCEHCSYKTRQVGNLKLHALKHTGEKSFRCNLCDYKSREAGTLKQHMLIHTDEKPFSCDYCDYKCRRAGCLKRHMLIHTGEKPFSCDLCNFKCRYSVMLKKHMTRHSDEKLFCCEICNYKCGHAKSLKLHVSAHDDEKQFRCEYCGYMTRHTVNFKRHMLIHTGEKPYICSLCDYKFREPGKLKRHMLLHTDEKPLGCDLCDYKCRQVGSLKLHLLRHVDAIPFNCGLCDYKCRQTAHLKEHILTHPGEKLLCCGLCDYKCQEVTKLKWHMVKHAGEMSFSCDFCDYRCENSRPKSRAKKTFQCRICDSKFKSQGRLREHVMIHSGEAPFYCNFCRIKFRQADALKKHVLIHTDEKPFGCNLCDYKSRVSQNLKRHMLTHTDEKPLRCGQCDYRCKENRHMKLHMLMHTDEKPFRCERCDYKCGQVGHLRRHMLTHTGEKPFVCNLCDYKCRESATLKHHVLKHTDENSFSCGLCDYKCGEAKRMKQHVSAHIEEKPFCCEHCDYKNLKFGQLKRHMLTHTGKKPRSCDLCDYKCSAPSKMKRHKLIHTKEKPFSSGYTPTLRSARLEPGVLTCEIRTPQDWNVIVHKRNKNLTVQSCAFERGRKERTLMDQKRILSYSDRRACEMEFETKHKKRRVISVCALMMAVKFQEGNNKKKRSRWCKSWIQERNTFSHVSLLRELRGNCPDDYRNYLRMNGDLFDHLLALLTPHLTKQDTVMRNAIPSDERLIATLRYLATGRSFQDLKYSTAISPQALGYIIPETCKIIFETLRNEYLKFPTTKEEWLQIAEGFAKRWQFINCGGALDGKHVRIIPPPHSGALYYNYKHFYSVVLMALVDCNYEFIFVDVGKNGRLSDGAVIEYTEFSRKLKQRQLNLPSNRETVANLNFVFLGDEAFALTDNFLKPYPQAELNYDKRIFNYRLSRARNVVENTFGIIASRFRILHTAINITNVQNINYVILAICTLHNFLRRRSKGYITPTITDTENSNSCNSTQFGEWRKETAELTNLQRVISRTATNTAKQNRDNYKTYFMSEGSVPWQQSMINAGKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -