Dpar001411.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284475.1:11588246-11590845[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0002 0.018 16.9 2.3 1 23 10 32 10 32 0.98
2 22 5.6e-06 0.00052 21.7 3.0 1 23 38 60 38 60 0.98
3 22 0.49 45 6.2 0.7 2 20 67 85 66 88 0.92
4 22 0.00094 0.086 14.7 0.5 1 23 122 144 122 144 0.99
5 22 3.1e-05 0.0028 19.4 0.6 1 23 150 172 150 172 0.99
6 22 0.0022 0.21 13.5 1.4 1 23 178 200 178 200 0.96
7 22 0.0002 0.018 16.9 2.4 1 23 206 228 206 228 0.98
8 22 1.2e-06 0.00011 23.9 3.8 1 23 234 256 234 256 0.99
9 22 2e-05 0.0019 20.0 3.9 1 23 303 325 303 325 0.99
10 22 0.00015 0.013 17.3 2.7 1 23 331 353 331 353 0.98
11 22 0.0023 0.21 13.5 2.1 1 23 359 381 359 381 0.99
12 22 0.00051 0.047 15.6 1.9 1 23 386 408 386 408 0.98
13 22 0.00037 0.034 16.0 2.3 1 23 414 436 414 436 0.98
14 22 0.0016 0.15 14.0 3.8 2 23 443 464 442 464 0.97
15 22 0.058 5.3 9.1 6.8 2 23 471 492 470 492 0.97
16 22 2.4e-05 0.0022 19.8 2.1 1 23 496 518 496 518 0.99
17 22 0.5 46 6.2 7.6 2 23 524 545 523 545 0.95
18 22 0.065 6 9.0 2.2 2 23 551 572 550 572 0.96
19 22 0.00044 0.041 15.8 0.5 2 23 600 621 599 621 0.97
20 22 0.00042 0.038 15.9 1.2 1 23 627 649 627 649 0.98
21 22 0.0028 0.25 13.3 3.3 2 23 659 680 658 680 0.96
22 22 0.31 29 6.8 1.0 2 23 687 709 686 709 0.94

Sequence Information

Coding Sequence
ATGTtgaaacacaccggcgagaagccctTTAAATGTAACGTGTGCGGCTACAAGTGCGGCTTACCCTCGTACTTAAGAAAGCACATGCTTCAGCACAACGCCGAAAAGGATTTCAAATGTAACGTTTGCGATTACACGTGCAGCGTACCTTCGTACTTAAGAAGGCACATGCTGAAGCACGACGCCGGGAAGGATCTCAAATGTAACCTCTGCGATTACAAGAGCAACGTGCccaacaattttaaattgcacGTGTGGAAGCACACCCACGAGAAGTCGTACAAATGCGACTTATGTGACTACGGAACCTGGTGGCCCAATGCTTTAAAAAGACACTCGCTgtcgcacaccggcgagaagccgttcaagTGTAGCATTTGTGACTTCCGCACCAAACTCAAGGCGGGCCTCAAGGCGCACGTGTTGACACACACCGATCAGAAGACGTTCAAATGTAGCTCCTGCGATTACGAGTCCGATCGAcccggaaatttgaaaaaccACATGATGACGCATTCCGAAGAAAAACCGTTCAGGTGTGACGTTTGCGAGTTCCGATGCAGGAGGCCCGGGGACTTGAAATCGCACGCGTTGCAACACagcgacgagaagccgttcgaaTGTCAagtctgcgattataaatgtcgctGGCCCGCAAATTTAAGGAAGCACATGAGGAAACACCCCAGGGAGATGCCGTACAAGTGTAATATCTGCGGCAAAAAATATCAGCATTCGGGGAATTTAAAAAGGCACCTGATGAAGCATGGAGAACGAAAAGTCAAGGAGGATCCGAGAGAGAGAGAAACTTTataTAAAGAATATATCTTGACGCATCTCTTTCCTAAAAGACGCGACGTCGACGAACAACCGAAGAGGAGCAAAATCCGAAACGCCGAAAACCTGTTCAGATGCGTCATTTGCGATTACAGGTGCAAGCGGTCGACGAACTTAAGACTTCACATGATGACACACACCAGCGAAAAGCCATACGAATGTAACGCGTGCCAACGCCGATACAGGAGCAGACACAATTTAAACTTGCACATATTGACGCACACCGATGAGGACCAGTATAAATGCAACAGCTGCGAGTACAGGGCCCGGACGAGCAACGAATTGAGCCGACACCTAAAGAAGCACATCGAGAAATGGTTCGAATGTAGCATTTGTGATTACAAGTGTAAAATCGCCGCTCGTCTAAAAAGACATATGTTGACGCATACCGGCGAAAAACCGTTCAAGTGTGACGTATGCGGCTTCGAATGTAGGAGAAAGACGACTTTACAAGATCACGCGTTAACGCATACCGGTGAGAAACCGTTAAAATGTGACGTGTGCGAGTACAGATGCAGGACGCGCGAGTCCTTGCGTAAGCATCGCATAAGGCACAACGACGAGAAGCTGCTGAAATGTGCTCTGTGCGATTACACAAGCGTGCGACACTGTCATTTGAGAACGCACATGTTGAAACACACGAACTCATTCAAATGTAACGTCTGCAGTTACACGTCGACTTCGTCGAAGTTATTAAACAGACACATGAAAGTGCACGTCGGCAAGCCACTCAagtgtgacgtttgcgattATCGTTGCAGGTACCGTTGCCATTTGAGAGATCATTCGGCGAAGCATGATGCTAAAAGATTGAAATGCAGCGTTTGCAACTACAGATGTACTCTGCCAACACTTTTCAAACAACACGAGGCGACTCACGCAAAATGTGACGCGCCCGGACACATTGTGACGCACACCGATGAAAACGCTTTCAAAATTTCTGCAAGCGAAAAACTTCTGACGTGTAACCTTTGTAATTACAAAACGCGGAGCGCCGGGAACTTGAGAGTCCATCGGGCGACGCACACAGACGAGAAACGGTACAAGTGCGGTACTTGCGGCGAAAAGTTTAAATACCCTCAAGTTTTCAAAAGTCACATGGTTAAACACATGGACGTGAAGCCGGAGAAACCGTTGAAGTGTAACTCTTGCGATTATCGCTGCGACTTCCCGTCGCAATTAAAGAAGCATCTTATGCAACACACCGGTGAAAAACCACTCAAGTGTGAGCTGTGCGATTACCGTACCATTTGGTACTCAACTTTAAAGAGGCACGTGTCGAAGAAACACATCGACATCAAACCGAACGAAAATGTAGTCGAGTCGTGTGATGAGACACACCGGCGAAGAGTAGATGTGTGA
Protein Sequence
MLKHTGEKPFKCNVCGYKCGLPSYLRKHMLQHNAEKDFKCNVCDYTCSVPSYLRRHMLKHDAGKDLKCNLCDYKSNVPNNFKLHVWKHTHEKSYKCDLCDYGTWWPNALKRHSLSHTGEKPFKCSICDFRTKLKAGLKAHVLTHTDQKTFKCSSCDYESDRPGNLKNHMMTHSEEKPFRCDVCEFRCRRPGDLKSHALQHSDEKPFECQVCDYKCRWPANLRKHMRKHPREMPYKCNICGKKYQHSGNLKRHLMKHGERKVKEDPRERETLYKEYILTHLFPKRRDVDEQPKRSKIRNAENLFRCVICDYRCKRSTNLRLHMMTHTSEKPYECNACQRRYRSRHNLNLHILTHTDEDQYKCNSCEYRARTSNELSRHLKKHIEKWFECSICDYKCKIAARLKRHMLTHTGEKPFKCDVCGFECRRKTTLQDHALTHTGEKPLKCDVCEYRCRTRESLRKHRIRHNDEKLLKCALCDYTSVRHCHLRTHMLKHTNSFKCNVCSYTSTSSKLLNRHMKVHVGKPLKCDVCDYRCRYRCHLRDHSAKHDAKRLKCSVCNYRCTLPTLFKQHEATHAKCDAPGHIVTHTDENAFKISASEKLLTCNLCNYKTRSAGNLRVHRATHTDEKRYKCGTCGEKFKYPQVFKSHMVKHMDVKPEKPLKCNSCDYRCDFPSQLKKHLMQHTGEKPLKCELCDYRTIWYSTLKRHVSKKHIDIKPNENVVESCDETHRRRVDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-