Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: su(Hw)
Assembly: GCA_958336345.1
Location: OY284479.1:41807036-41809541[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.3e-06 0.00058 21.6 0.2 1 23 136 159 136 159 0.96

2 13 0.0038 0.35 12.8 5.6 2 23 193 215 192 215 0.96

3 13 0.00059 0.055 15.4 0.0 1 23 221 243 221 243 0.98

4 13 1.9e-06 0.00018 23.2 1.8 1 20 249 268 249 270 0.96

5 13 1.5e-07 1.3e-05 26.7 1.0 1 23 281 303 281 303 0.98

6 13 4.4e-05 0.004 18.9 1.3 1 23 313 335 313 335 0.98

7 13 1.5e-05 0.0013 20.4 0.3 1 23 341 363 341 363 0.98

8 13 9.6e-06 0.00089 21.0 3.2 1 23 369 391 369 391 0.99

9 13 4.2e-05 0.0038 19.0 2.6 1 23 397 419 397 419 0.95

10 13 6.2e-05 0.0057 18.5 2.3 1 23 425 448 425 448 0.95

11 13 1.5e-05 0.0014 20.4 0.9 2 23 455 476 454 476 0.94

12 13 1e-05 0.00096 20.9 2.1 1 23 482 504 482 504 0.98

13 13 1.2e-05 0.0011 20.7 3.1 2 23 511 533 510 533 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.3e-06	0.00058	21.6	0.2	1	23	136	159	136	159	0.96
2	13	0.0038	0.35	12.8	5.6	2	23	193	215	192	215	0.96
3	13	0.00059	0.055	15.4	0.0	1	23	221	243	221	243	0.98
4	13	1.9e-06	0.00018	23.2	1.8	1	20	249	268	249	270	0.96
5	13	1.5e-07	1.3e-05	26.7	1.0	1	23	281	303	281	303	0.98
6	13	4.4e-05	0.004	18.9	1.3	1	23	313	335	313	335	0.98
7	13	1.5e-05	0.0013	20.4	0.3	1	23	341	363	341	363	0.98
8	13	9.6e-06	0.00089	21.0	3.2	1	23	369	391	369	391	0.99
9	13	4.2e-05	0.0038	19.0	2.6	1	23	397	419	397	419	0.95
10	13	6.2e-05	0.0057	18.5	2.3	1	23	425	448	425	448	0.95
11	13	1.5e-05	0.0014	20.4	0.9	2	23	455	476	454	476	0.94
12	13	1e-05	0.00096	20.9	2.1	1	23	482	504	482	504	0.98
13	13	1.2e-05	0.0011	20.7	3.1	2	23	511	533	510	533	0.94

Sequence Information

Coding Sequence: ATGGATGAACCATCTGGGGGTATGTCTGCGAAGACCGAGCCACCCGAAGACATGGACACGGAAGCAGACATTGAGAACCAAACCACGGAGCTGAAGATCGTCCCGTTGTTTCACGTTTCCGATCCGGACAACATCATCACAACGATCGAAGTTACGACGGACACGGACGGCAACTTTGAAATTAACACGATCGAGCACGGAGAAAACATCGAAGACGTGCAGAATCAAGTCGAACTTGAAATGGAAGCATCCGAGTTCGTGCACGAAGGCGACATCCAGTACGAAATAGAGGCTACCGATGAGGCTGAAACTGAAGAGGAcgaggaagaggaagaggatCCCGACGACCCGGATTACATAGACGAGAGGGTCAATAAAGTTAAAAGGGAAGTCGACGAGGAAACATATCCGTGTGATCTGTGTCAACGCAATTTTAAAACACCAGCGAGTTTGAAGAGGCACATAACTGTCGTGCACGCTGAAGAATGCAACCTAGATGATCCGCTGGCGCTCGAACTGTGCACGTGCTGCGGCGAGCCAGTCGACTCTGCTTCTGCCCATACGACGGGCGACATCAAGTGTCCAGATTGTGACAAGCGTTTCATGATGCAATGCAACTTGGACAGACACCACTGTATAGAGCACGGGGAGGAGGGTCGATACGTCTGCATGGATTGCTCGGAAACTTTTGCAGCAAAATCAGAGCTCATCGAGCACTTGGCGGTTCATCCGCTTACGAAACCGTACTCGTGTAAAGTGTGCGGAAAGGAGTTCACACGAAAGTATCACTTGGATAGGCACATGACACAGAAGGGTTGTGACGGGACTCCTCGGAATCGGTTTCAGTGTCAGGTTTGCTCAAAAGTGTTTTCTCGCAAGGACAATCTCAGAGATCACTTGCGCGCTCATGCGGGCCAAGTCAAAAAGAAGAAGGTGTTCGTTTGCTCGTATTGCCACAGGGAATTTCAGGGATCAGCTTTACTGTCGGTTCACATGCGCACACACACAGGTGAAAGGCCTTACGCGTGCGATTTATGTCCTAAACGATTTCCTTCCAGCGGTGCTATGAGGAAACACCGGAGGATGCACACCGGAGAGAAACCGTATGAGTGTAAGCAGTGTCACAAGAGATTCGCTGCGAAAGAAACTTTAAATCGCCACGTACGCACGCACACGGGTGACAAGCCACACAGCTGTCAATTCTGCGGAAAGAGTTTCATACAAGCCGCACAACTGCGAGCGCATATTTTCCACCACACCGGAGAGAATGCGTTCACGTGCCCCCATTGTAATCGTGCTTTCAACCGAAGGGTGAGGCTCACAACGCACATTCAATTCGTGCACGAGGGGGCACAGCCGATGCAGTGCCCGCAATGTGAGAAGACCTTCTACAGGAAGGAAGACCTGCAAAGACACAACCTCCTTCACAGTGGTGTTAAACCTTTCGAGTGCGACGTTTGCCACAAGAGTTTCGCCGTAAAGTCCTCGTTGAAGCTTCACAAACTGACACATCGTAAGGAGCCACCGTGTAGTTGCGACGAATGCGGAAGAGCTTTCATCAGACAGGATTGCCTCTTGAGACACATGAGGGCCAAACACAGGGACGTCTTGGAGGATATTTTGGCCGGTGCCGAGAAGAAACGTCTGCAACAGCAGCTGTTGAGTGTGGCTCAAGATGTGGCTGCCGGAAATAAACTGAGCTTAGCTCAGAACGGCATCTGGAACGAACTGACACTTACAGACTCCATCAAGGAACTCCTAACGCTTTTGGTCGATGAGACTACTTTGAAAGCGTTCGGCTGGCCGGATGTGCCCGTGGATAAGATGTTGGATGCCGTTATCAGGAGATGCGGGCACAAGCCTGCATCGGAAGAGGATTTCGATTACATCGGGCGAATGCGTGAGAATGCCAAGTTGTTATTCACAGTGGTCATCGACGATGATGCGATCAAGGCACTTCTTAATAACCAAACGGTGGATGAAGTCATACTGCACGTTCTAAGATTGGCCAGAAACGAATAA
Protein Sequence: MDEPSGGMSAKTEPPEDMDTEADIENQTTELKIVPLFHVSDPDNIITTIEVTTDTDGNFEINTIEHGENIEDVQNQVELEMEASEFVHEGDIQYEIEATDEAETEEDEEEEEDPDDPDYIDERVNKVKREVDEETYPCDLCQRNFKTPASLKRHITVVHAEECNLDDPLALELCTCCGEPVDSASAHTTGDIKCPDCDKRFMMQCNLDRHHCIEHGEEGRYVCMDCSETFAAKSELIEHLAVHPLTKPYSCKVCGKEFTRKYHLDRHMTQKGCDGTPRNRFQCQVCSKVFSRKDNLRDHLRAHAGQVKKKKVFVCSYCHREFQGSALLSVHMRTHTGERPYACDLCPKRFPSSGAMRKHRRMHTGEKPYECKQCHKRFAAKETLNRHVRTHTGDKPHSCQFCGKSFIQAAQLRAHIFHHTGENAFTCPHCNRAFNRRVRLTTHIQFVHEGAQPMQCPQCEKTFYRKEDLQRHNLLHSGVKPFECDVCHKSFAVKSSLKLHKLTHRKEPPCSCDECGRAFIRQDCLLRHMRAKHRDVLEDILAGAEKKRLQQQLLSVAQDVAAGNKLSLAQNGIWNELTLTDSIKELLTLLVDETTLKAFGWPDVPVDKMLDAVIRRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDDAIKALLNNQTVDEVILHVLRLARNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466616;
90% Identity: iTF_00466616;
80% Identity: -