Dpar000462.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284475.1:2340594-2347692[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 1.7 1.6e+02 4.5 0.0 3 23 115 135 113 135 0.94
2 21 0.0062 0.58 12.2 0.9 1 23 155 178 155 178 0.93
3 21 0.26 24 7.0 1.0 1 23 183 206 183 206 0.92
4 21 0.026 2.4 10.2 0.1 1 23 241 263 241 263 0.95
5 21 4.8e-05 0.0045 18.8 0.7 1 23 269 292 269 292 0.97
6 21 9.4e-05 0.0087 17.9 1.9 2 23 304 325 304 325 0.97
7 21 3.9e-05 0.0036 19.1 1.8 3 23 333 353 332 353 0.98
8 21 5.6e-05 0.0051 18.6 3.6 1 23 359 381 359 381 0.98
9 21 0.00038 0.035 16.0 0.5 1 23 387 409 387 409 0.98
10 21 0.0016 0.15 14.0 0.0 1 22 415 436 415 436 0.97
11 21 0.045 4.2 9.4 2.0 2 23 480 502 479 502 0.94
12 21 0.1 9.5 8.3 0.1 1 23 517 539 517 539 0.99
13 21 0.00031 0.029 16.3 3.8 1 23 543 565 543 565 0.98
14 21 0.0037 0.34 12.9 0.1 2 23 572 594 571 594 0.96
15 21 0.24 22 7.2 1.9 1 23 600 622 600 622 0.92
16 21 0.051 4.7 9.3 0.8 1 23 628 651 628 651 0.95
17 21 0.00082 0.075 14.9 0.9 2 23 662 684 662 684 0.97
18 21 1.8e-05 0.0016 20.2 3.5 3 23 692 712 690 712 0.96
19 21 5.8e-06 0.00053 21.7 0.7 1 23 718 740 718 740 0.97
20 21 8.7e-08 8e-06 27.4 1.6 1 23 746 768 746 768 0.97
21 21 0.01 0.96 11.5 0.1 1 21 774 794 774 795 0.95

Sequence Information

Coding Sequence
ATGAATCTAGCCATAGTTAGGTCCTTCGAACCTCTAGTGACGATAACGGAAGTGGAAAAGACGAAAGTCAACAAGTGGCACAGAAAGCTGCCCGAGATCGAAATAATCCCCGTGGACAAAGACGGCACGCTCATGATAAAAGACGAGGATAGAAGTGAGAGGCACGGCAGGAAGCAGCACGCGATCGAGATAACCAAGAGGACGAAACAGGCGCTCGCTTCGAAGTACAACAAGAAGAAACCTTCGACTGGTTACGTGAACCCCTTCAACTACGAAAACTTGACCGTCAGGAATTTCCACCGCAAGAACAGGCACTTCGATAATTCGAATTTGAAGTGGGCCTGCATGATCTGCAGCGAGGTGGCCGTCGATAAAGAAGGCCTCATAGAGCACTACGAGGAGCACAAACGCGAGAGGGACGAGAGGATTAAATCTGAGCCCGCAGACGACGACAGTGAGTACTTTAACTGCGCCATCTGCGGGCAGGAATTTACGTCCCTTAAAGGGTACGAGAAGCACTTCGATAAGAAACACGGCGAGAGAAAGTACAGCTGCATCGAATGCAGTAAAGTCTACAAGGACGCCCTCCAACTGTGCATACATAACTACACCGTCCATGCTTCGGAAGACAAAAAGTACAAGTGCATAAGTTGCGAGTACACCACGTTCGTAAGGAAGAAGCTAAAGGAACACCTGGACGAGCACGCGGCGTCCTTTCAATTTAAATGCGAGGTTTGCAATAAGGGGTTCGAATTGGAGGGCGACTTCGACGAGCACAAGATCGTGCACGGCGTGACTTCGCCGTTCTCTTGCGACGTCTGCGGCAAGACCTTCCCCTACACGAAGTACCTGTTGGTGCATAAAAAAACTGCGCACCCGGAGATATTCGGGAGCAACCCCGCGGCGAACGAATGTCAACTGTGCAACAAGCGTTTCGCCCACAAGAAAAGCCTGATCTTGCACATACGTGGTCACACGGGGGAGAACTCGGTTCTGTGCGACATGTGCGGCAAAAGACTGTCCAGCAGCGAGCATCTTAAGCAACACTTAAGGATTCACACGGGGTTCAAGCCGCACAAGTGCTCGGTCTGCGGGAAGGGCTTCGCCAAGAAGTGCAACTTGACTTTACACGAGAGGGTTCACAGCGGGGAGAAACCCTACGTTTGCCGCGTGTGTTCCAAAGCGTTCTCACAGAGGTCGACCGTGGTCATTCACGAACGATATCACACCGGGGAGAGACCCTACGTGTGTACCTTGTGCAATAAAGGGTTTGTGGCGAAGGGACTGCTCAGTGTTCACATAAAAACCTGCACCGTCATTCCCGCCGAaatAGTAACTGATGTGCAAGTTAACGAAGAAGACGATTTAGATCTTTTAGAGAGACTGAGACGTTGGAGAACGCGACATCCCAGAAAAAGAAGACGTGGAAGGAACTGGCATTGCCGAGAATGCAACCAGAAATTCGCAAGCAAGAAGCTAGTGCTGCAGCATCGCCGCGACGTTCACGACGACGAGACCGACGAAAACTACACGTGCCTAAACGACGTTTACCGTTGCAAGTTGTGTAGCGTCGCGGCGTCCTCGAAGATAGAGATCGAGAACCACTTGCTTACCCATTCCGATTCCCACGTTTGCACCATCTGCGGCCAGAGCTTTCCCTCGAGCTACAGATACCTGCACCATTTAAAGACTCACACCTCGGGCGATCAGACTTCCTGCCCGTTATGCGACGTGAAAACGAGCACGCCACAGGGGCTCATGCAGCACATAAATTCATCGCATTTGAAAAACTTCCCGTACTATTGCATGGAATGCGACAAGGGTTTCTATTACAAGCTTCGTTTCGAGGAGCACGAGAACTTTCATAGATTCGGCAGCAAGTTCACTTGCGTCGTGTGCAACGCAAAGTTTCAGTATTCGCGAAGCCTCTTGCTTCATCAGACTAATTTGCACACCGTCTGGATTTCCGGAGAGGTGAAGAACCGATGCACGATATGTAAGGTGCGATTCGTCAAAGATGGGACGTTGCAGAATCACATGCGGGTGAAACACGGCGGTCTGAAGCCGCACCTCTGCGATAACTGCGGCAAAAGTTTCAAAGACAAGACGAAGCTGAGATTGCATTATAGGATACACACGGGGGAGAAGCCGTTTGCGTGCGGTTACTGCGAAAAGAGCTTCTCCAAAAAGGATTACTTGGTGTTGCACGTGCGCActcataccggcgagaagccccATTCCTGCGAGTACTGCGGCAAGTCGTTTAGCCAGCCTTCGACGCTCAGGATTCACGTGCGATCGCATACAGGAGATAAGCCCTATGTTTGTCACAGATGTTCGGCAGCTTTTCCTGTTAGGGCATCGCTAACGGCGCATTATAAGTCTTgcgcaaaaaaataa
Protein Sequence
MNLAIVRSFEPLVTITEVEKTKVNKWHRKLPEIEIIPVDKDGTLMIKDEDRSERHGRKQHAIEITKRTKQALASKYNKKKPSTGYVNPFNYENLTVRNFHRKNRHFDNSNLKWACMICSEVAVDKEGLIEHYEEHKRERDERIKSEPADDDSEYFNCAICGQEFTSLKGYEKHFDKKHGERKYSCIECSKVYKDALQLCIHNYTVHASEDKKYKCISCEYTTFVRKKLKEHLDEHAASFQFKCEVCNKGFELEGDFDEHKIVHGVTSPFSCDVCGKTFPYTKYLLVHKKTAHPEIFGSNPAANECQLCNKRFAHKKSLILHIRGHTGENSVLCDMCGKRLSSSEHLKQHLRIHTGFKPHKCSVCGKGFAKKCNLTLHERVHSGEKPYVCRVCSKAFSQRSTVVIHERYHTGERPYVCTLCNKGFVAKGLLSVHIKTCTVIPAEIVTDVQVNEEDDLDLLERLRRWRTRHPRKRRRGRNWHCRECNQKFASKKLVLQHRRDVHDDETDENYTCLNDVYRCKLCSVAASSKIEIENHLLTHSDSHVCTICGQSFPSSYRYLHHLKTHTSGDQTSCPLCDVKTSTPQGLMQHINSSHLKNFPYYCMECDKGFYYKLRFEEHENFHRFGSKFTCVVCNAKFQYSRSLLLHQTNLHTVWISGEVKNRCTICKVRFVKDGTLQNHMRVKHGGLKPHLCDNCGKSFKDKTKLRLHYRIHTGEKPFACGYCEKSFSKKDYLVLHVRTHTGEKPHSCEYCGKSFSQPSTLRIHVRSHTGDKPYVCHRCSAAFPVRASLTAHYKSCAKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-