Dpar001133.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- ZNF296
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8751528-8755915[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.0064 0.59 12.1 2.5 1 23 10 32 10 32 0.99 2 34 0.0016 0.15 14.0 1.9 2 23 38 59 37 59 0.96 3 34 0.045 4.2 9.5 0.3 1 23 64 86 64 86 0.97 4 34 0.017 1.5 10.8 3.2 1 23 92 114 92 114 0.97 5 34 0.0065 0.6 12.1 4.2 1 21 120 140 120 141 0.95 6 34 0.26 24 7.1 3.2 1 23 154 177 154 177 0.98 7 34 0.001 0.096 14.6 0.7 3 23 185 205 183 205 0.98 8 34 0.0029 0.27 13.2 8.6 1 23 211 233 211 233 0.98 9 34 0.0015 0.13 14.1 2.6 1 23 241 263 241 263 0.98 10 34 0.0083 0.77 11.8 1.2 1 23 269 291 269 291 0.97 11 34 0.0037 0.35 12.9 4.0 2 21 298 317 297 318 0.94 12 34 0.0043 0.4 12.7 0.7 1 23 332 354 332 354 0.97 13 34 0.013 1.2 11.2 2.0 1 23 360 382 360 382 0.98 14 34 3.1e-05 0.0029 19.4 1.0 1 23 388 410 388 410 0.98 15 34 0.0079 0.73 11.8 3.1 1 23 416 438 416 438 0.97 16 34 0.19 18 7.5 0.3 1 23 467 489 467 489 0.96 17 34 0.00026 0.024 16.5 6.1 1 23 495 517 495 517 0.98 18 34 0.0082 0.75 11.8 1.8 1 23 522 544 522 544 0.98 19 34 0.15 14 7.8 4.3 1 23 550 573 550 573 0.97 20 34 0.053 4.9 9.2 1.9 2 23 578 599 577 599 0.97 21 34 2.3e-05 0.0021 19.8 1.6 2 23 652 673 651 673 0.97 22 34 0.0043 0.39 12.7 2.3 1 23 679 701 679 701 0.97 23 34 0.13 12 8.0 2.5 2 23 709 730 708 730 0.96 24 34 0.00025 0.023 16.6 0.8 3 23 738 758 736 758 0.98 25 34 0.0025 0.23 13.4 0.9 1 23 764 786 764 786 0.97 26 34 0.0015 0.14 14.1 1.8 1 23 792 814 792 814 0.97 27 34 0.0039 0.36 12.8 3.4 1 23 820 842 820 842 0.98 28 34 0.013 1.2 11.2 1.1 1 23 852 874 852 874 0.98 29 34 0.022 2 10.4 0.3 1 23 882 904 882 904 0.98 30 34 2.7 2.5e+02 3.9 2.1 1 23 910 932 910 932 0.96 31 34 0.29 27 6.9 3.4 1 23 938 960 938 960 0.98 32 34 0.00029 0.027 16.3 3.5 1 23 966 988 966 988 0.98 33 34 0.01 0.94 11.5 3.2 1 23 994 1016 994 1016 0.97 34 34 0.00017 0.015 17.1 1.8 3 23 1024 1044 1022 1044 0.98
Sequence Information
- Coding Sequence
- atgttaacacacacTGGCGAGAGGCCGTATAAAtgtgatgtttgcgattatGCATGCCGACAAGGAACCAAATTAAAAGAGCACAAATTAACGCACAGTGATGTGCGGTTGAGTTGTCGCCTTTGCGATTACAACTGCCAGAACCCCGCGTATTTGAAACGGCATATGTTAACGCACAGCGAGAAACTGTTCAGTTGCGAAGTGTGCAGTTACAAGAGCGGTGATCCCGGAAAattgaagcagcacaagttaatacacGTCGGCGAAAAGCGGTTCAGCTGTGACTTGTGCGGTTACAAATGTCGACAATTGAGAAAGTTGAAACTGCACGCTTTAAGACATACCGACTataagccgttcagttgtaacctttgcgattacaggTGCAAAGAAAGCGCACATTTGAGAAAGCACATGTACAAAAAGGCACTCGAATCGAAAATTCCGAGCGGCAACACATTCGAATGCCGCATTTGCGGTTCTTACAGGTGCCGGGAACTACGGTACTTAAAGAGGCACTTGTTAACACACACCGAGGAAAAGCCGTTTGGTTGTGAATTTTGCGGATACAGGTCTCGGCAAGTCGGAACcttgaaacggcacatgttaacgcacaccgACAAGAGGCCGTTCAGTTGTAAACTATGCGATCACAGATGCCGACGACTCGCGCATTTAAAAAGGCACATGTCATCGCACGCCGCTGCCGGCGTGAAGTCGTACAGTTGCGAGCAATGCGATTACAGTTGCCGGGGAGctagaaaattaaaacaacactTGTTAACGCACACCGACGGAGAGTTGTTCACTTGTGATTTATGCGATTACAAGAGCCGAAAGCTTGGGTATTTGAAACGGCACGAGGTCACACACACCGACGGAAAGTCGCTGACGTGTGAGCATTGCGGATATAAAACTCGGCATAGCGGTACGTTGAAACGACACATATGTCAGCTGACTTTCATAGCCGAACCTGCGGAGGACAAAAGGAGTTTCGAATGCCGCATATGCGATTCTAAATTTTCATCTCGGAGAGTTCTAAAAAGTCACGTGCTCatacataccggcgagaaaccgtacAGTTGtaacctttgcgattacaaaaccCGACTGCGTCGTCAGATAAGACGGCACATGGTAACACACACCGATGAAAAACCGTTCAGATGTgtcctttgcgattacaaattcAAAACGTCCGAACTTTTGAAGCGCCACGTCTTAGTGCACAGCAACGTCAGTCAATTCAGCTGCGACCTTTGCGAGTACAAGTGTCGACAGTTGGGAAGTTTGAAGCGGCACGAGTTGAAACACACCGGTGAGCCACCGTTAATTTGCGATTACGAATGCCGATCTGTCCTAGACATGAAGAAACACAAGGCAGAACATAGCGAGGTGTTCGCTTGTGCTCTTTGCGAATATAAAGGCCGACAGGCCAACAAATTTAAGCtgcacatgttaatacacaccggaGAGAAGCCTTTCTCGTGTGAagtttgcgattacaaatgccgacggCGCTCTAAATTGAGGCGGCACATGTTCAGACACATCGGTGAGCCGTTCTCGTGCGGAGTTTGCGGCCACAAAAGCCGAAAAGTCCAAGAattgaaacagcacatgttGAGGCACGCCGGCGAGAAGCGGTACAGTTGCAATTTTTGCAACTTTAAGTGTCGATATGCCGCAGTTTTACAACGACACAGATTAAAACAACATGTCGGCGAGTCGCGTTGTCAGCTCTGCGGTTACAAAGCTCAGACCCCTGCGCATATGAGACGGCATAAGTTAACACACACCGATGAGAAACCTTCCAGTTTATTGTACGGGGGGGCGTCTGAATCTGAAAGTGTGAGCGAAAGGAAACGCAGATGTCGCATGTGCGgttcaaattttaaatgtcgCAAACACAGCAGCGGGCATGTAATGCCACACACTTCCGAGAAGCCATCCAGCTGTGATTTTTGCGGATACAAAACCAAACGACGCGACAATCTGAAACGGCACATTATAACGCACATAGGCGAGAAGCTGTTCAGTTGTGAACTCTGCGGTTACAAGTGTCGCGATTCCACGCTTTTCAAATGGCACGGATTGACGCACAACAAAGGCAGACAGCTGCTCAGttgcgacctttgcgattacaaatgccgactgACCGGAAAGTTCAAGCAGCACATGTTggtacacaccggcgagaagccgtacgGTTGTAACCTTTGCGAGTACAAAACCCGACAGTCGGGGAACCTGAAGCAACACATGCTGACGCACAccaacgagaagccgttcgcCTGCGAATTTTGCGATTACAGAAGCGGGCAGATGGGCAAGTTGAACCGGCACATGAAAACGCACACCGGCGTGAAACCGTTCGCTTGTgaactttgcgattacaaatgccgactgCCCGGGATGTTCAAGCGGCACATGTTGACGCACGGCAATGAGAAATTATTCAGATGTGCTTCTTGCGATTTCACGTGCCAACGATCCGGAACTTTGAAGCAACACATGTTAACACATTCCGtcgaggaggaggaggagaagACGTTCAGATGTGATACTTGCGGGTACGAATGCCAATTAGAGGCACAGCTCACACGACATGCGTTGACACATCTTGGCGAGAAGACACCTAcattcagttgtgatatttgcggGTACGAATGCCAACTGGAGGCGGAGTTGAAATTACACGTGTTAACGCATCCTGGCGAGAAGACGTTCACTTGTGATTCTTGCAAGCACGAATGCCAATCAGAGGTAGAGTTGAAACTGCACGTGTTAGCACATCCTGGCGAGAAGACGTTCACTTGTGACTTTTGCAAGCACGAATGCCAATCAGAGGCAGAGTTGAAACTGCACGTGTTAACGCATCCTGGCGAGAAGACGTTCACTTGTGGTTTTTGCGGGTACGAATGCCGATCGCAGGTGGAGTTCAAGCGACACATGTCGACACACCTTTGCGAGAAGCGGTACGCTTGTGAATTTTGCGAATATAAGACTCGGCATTCCAGCACGTTCAAGCGACACGTGCtgatacacaccggcgagaaaccgttcggcTGTGAACTTTGCGACTATAAGTGCCGGCAAGCCAGTCAATTGAAAACGCACATGGCGACGCATCGACAATCAGCTGCTGCACAGTACATACTTGGAGAGTAG
- Protein Sequence
- MLTHTGERPYKCDVCDYACRQGTKLKEHKLTHSDVRLSCRLCDYNCQNPAYLKRHMLTHSEKLFSCEVCSYKSGDPGKLKQHKLIHVGEKRFSCDLCGYKCRQLRKLKLHALRHTDYKPFSCNLCDYRCKESAHLRKHMYKKALESKIPSGNTFECRICGSYRCRELRYLKRHLLTHTEEKPFGCEFCGYRSRQVGTLKRHMLTHTDKRPFSCKLCDHRCRRLAHLKRHMSSHAAAGVKSYSCEQCDYSCRGARKLKQHLLTHTDGELFTCDLCDYKSRKLGYLKRHEVTHTDGKSLTCEHCGYKTRHSGTLKRHICQLTFIAEPAEDKRSFECRICDSKFSSRRVLKSHVLIHTGEKPYSCNLCDYKTRLRRQIRRHMVTHTDEKPFRCVLCDYKFKTSELLKRHVLVHSNVSQFSCDLCEYKCRQLGSLKRHELKHTGEPPLICDYECRSVLDMKKHKAEHSEVFACALCEYKGRQANKFKLHMLIHTGEKPFSCEVCDYKCRRRSKLRRHMFRHIGEPFSCGVCGHKSRKVQELKQHMLRHAGEKRYSCNFCNFKCRYAAVLQRHRLKQHVGESRCQLCGYKAQTPAHMRRHKLTHTDEKPSSLLYGGASESESVSERKRRCRMCGSNFKCRKHSSGHVMPHTSEKPSSCDFCGYKTKRRDNLKRHIITHIGEKLFSCELCGYKCRDSTLFKWHGLTHNKGRQLLSCDLCDYKCRLTGKFKQHMLVHTGEKPYGCNLCEYKTRQSGNLKQHMLTHTNEKPFACEFCDYRSGQMGKLNRHMKTHTGVKPFACELCDYKCRLPGMFKRHMLTHGNEKLFRCASCDFTCQRSGTLKQHMLTHSVEEEEEKTFRCDTCGYECQLEAQLTRHALTHLGEKTPTFSCDICGYECQLEAELKLHVLTHPGEKTFTCDSCKHECQSEVELKLHVLAHPGEKTFTCDFCKHECQSEAELKLHVLTHPGEKTFTCGFCGYECRSQVEFKRHMSTHLCEKRYACEFCEYKTRHSSTFKRHVLIHTGEKPFGCELCDYKCRQASQLKTHMATHRQSAAAQYILGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -