Dpar015772.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284477.1:34886601-34891965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.8e-05 0.0035 19.1 0.5 2 23 31 52 30 52 0.98 2 18 0.016 1.5 10.8 1.6 2 21 59 78 58 80 0.93 3 18 0.035 3.3 9.8 7.9 1 23 86 108 86 108 0.98 4 18 0.028 2.6 10.1 0.2 3 23 116 137 114 137 0.93 5 18 3.1e-05 0.0028 19.4 0.4 3 23 144 164 143 164 0.97 6 18 0.00031 0.028 16.3 2.6 1 23 173 196 173 196 0.96 7 18 0.00042 0.039 15.8 0.5 1 23 204 226 204 226 0.98 8 18 6.7e-08 6.2e-06 27.8 0.8 2 23 233 254 232 254 0.98 9 18 4.6e-05 0.0042 18.9 3.9 1 23 260 282 260 282 0.98 10 18 5.9e-05 0.0055 18.5 0.5 2 23 502 523 501 523 0.98 11 18 0.0024 0.22 13.5 1.5 2 23 530 551 529 551 0.96 12 18 3.6e-06 0.00033 22.3 2.6 1 23 557 579 557 579 0.98 13 18 0.0011 0.1 14.5 0.3 2 23 586 608 585 608 0.93 14 18 0.00021 0.019 16.8 4.5 1 23 613 635 613 635 0.98 15 18 0.00025 0.023 16.6 1.2 1 23 644 667 644 667 0.97 16 18 0.0019 0.18 13.8 1.0 1 23 675 697 675 697 0.97 17 18 8.2e-06 0.00076 21.2 1.4 2 23 704 725 703 725 0.98 18 18 2.4e-05 0.0023 19.7 3.2 1 23 731 753 731 753 0.99
Sequence Information
- Coding Sequence
- ATGCCTGATAGTTTCCTGACAATGAGACTTTTAAAAAGATGTGGAAATTCTGAAACTATTGTTATTTCCAGGAAAATATCAAGTACAGGGCAATGCCACATTTGTGGAGAGGTCTTCCTGCGAAAAGCTCTCCTAAGAAGACACATATTGTCACATAGCGAAGAGAGGCCCATACCCTGTGATGTCTGCCCAATGcgttttaaaaacaaagtctCAATGAAAGTTCACAGAAAATGCCACAGTGATGTGAAACCATTCAAGTGCGACACATGTGATAAAACCTTCAAGTGCAAGTTCTACTTGGAGTACCATTACAAGCGTCACATCAAGGATTACAAGATCATATGTGAAACGTGCAATAGAGGATTTTATACAGATGGCGAATACAAGCTGCATATGGGTTCTAAACATGGTCAGAGTAGTAATATTTGCCCGATTTGCAATAAGGCTTTGTATAATAAGACTGGTCTAAACAAACATATGAGGCAACATGCGGAGGATTACAAAGATGCTAAGTATAAATGCGAACTGTGTGGAAAGAGTTATTTGCATCAGAAGAACCTTGAAAAGCATACTAGTATTCAACACATGGATGGCATGAGAAAAGAGTACATCTGTGATTTATGTGGAAAACAGCTTTGTTCTGGTTCGAGTTTAATAGCACATCAACGGTTGCATAAAGGTATTAAGCCGAATAAATGTGATACATGTGGGAAGGGTTTCAATTCGAAATCAAACTTGGCAGTCCATATGCGGACACATACAGGTGATAGACCACATAAATGTGAACAATGCAATAAGGCTTTTACACAGAGAAACACTTTCGTTATTCATATGCGGTATCATACTGGTGAACGGCCTTATgttTCTCAAGATGATAGTTTGCCCAAGAAAATATGTGTCTCTTGTCTGGATAAACTGGATTCATTCTATCACTTCTGGAATACAACTGCGAACGTAGAAAAACAGCTACTAACATGGCTAGAACAAACCTCTGCAAAAACAGAATTCAAGATACAAGAAGAACTGCATTCCATCAAACAGGAAGAGTTAGATCCTCTGGAGCTCTTACCTCTAAATGCACATGAgaattttgtttcttgttctACACAAGCACCTACAGGTTTTCACTTTCAAGGGGAGTTTAGTGAGTCTCGGATAGAATTTCACAATGTGAAGGTCGAAGGATTTCAAGATAACGATTTCGAAAAAATGTACAAGAGTTGCACACATACAGAAATGCAGACACAAGCTGTCCCCAAATTCGCTGTAAATGGTGTCAAGACATACATAGAGGAAGAATTTTGCAAATCTCCATCAGCAACAACTGTTAAGACAGAAAAGGATAATCAAACTATTATTAACTCAGAAGACATTGATAGGAATCCTCAAATAAGTGAAATATTGGATAAGAAACCAGAGATGCAAAATTTTGgcTCTGAAACTAAGGTTGCTGTGTTCGGGAAAGAGGCGCCTACGTTCTTTCAAATACCAAGTACTGGACAATGCCATATTTGTGGAAAGATTTTCCTGCGAAGAGGTGGTTTAAAACAACACATGTTGGTTCATACGGATGAAAGGCCAATATCTTGTGACATCTGCTTTAAAGGTTTTAAGGACAAATTCACGATGCAAGATCACAGAAAATACCACAGCGATGAAACACCATTCAAGTGCGATACATGTGATAAGACTTTTAAGCGTAAAATCTCTTTACAAGTGCATGAAAAACGCCACATTAAGGATTACAAGATGATGTGTGAAATTTGTAACAGAGGATTTTATACAAATGCCGAATATAAGCTGCATATGGGTTCCAGGCATGGTCAGAGTAGCTATATTTGTTCTATTTGCCACAAACCTCTGTATGACAAGTGTAGCTTGAACAAGCATATGCAGACACATGTGGAGGGTTACAAAGACCCTAAGTACAAGTGTGATTTGTGCGGAAAAAGTTTCTTGCAGGAGAGATATCTTAAAAATCACATTGATAAGCAGCACTCTGATGGCTCGCGGAGAGAATATGTCTGTGATTTGTGTGGGAAAATGCTTTGTTCTGGAACAAGTTTAAGGACACACCAATTATTGCATCAAGGTATTAAGCCCAATAAGTGTCATACTTGTGGGAAAGCCTTCACTTTAAGATCAGCTTTGATGGATCATTTACGTATACATACAGGTGAAAAACCGTACAAATGTGAACATTGCAATAAAGCTTTTACACAGAGGAACACTTATGTTATTCATGTGCGGTCTCATACTGGTGAAAGGCCGTCGAACTTCCTAGATCTTATTTACTTAGTTGACTTCATCGAGAAGTTATGTGAATTCATGAAGAACAAATAA
- Protein Sequence
- MPDSFLTMRLLKRCGNSETIVISRKISSTGQCHICGEVFLRKALLRRHILSHSEERPIPCDVCPMRFKNKVSMKVHRKCHSDVKPFKCDTCDKTFKCKFYLEYHYKRHIKDYKIICETCNRGFYTDGEYKLHMGSKHGQSSNICPICNKALYNKTGLNKHMRQHAEDYKDAKYKCELCGKSYLHQKNLEKHTSIQHMDGMRKEYICDLCGKQLCSGSSLIAHQRLHKGIKPNKCDTCGKGFNSKSNLAVHMRTHTGDRPHKCEQCNKAFTQRNTFVIHMRYHTGERPYVSQDDSLPKKICVSCLDKLDSFYHFWNTTANVEKQLLTWLEQTSAKTEFKIQEELHSIKQEELDPLELLPLNAHENFVSCSTQAPTGFHFQGEFSESRIEFHNVKVEGFQDNDFEKMYKSCTHTEMQTQAVPKFAVNGVKTYIEEEFCKSPSATTVKTEKDNQTIINSEDIDRNPQISEILDKKPEMQNFGSETKVAVFGKEAPTFFQIPSTGQCHICGKIFLRRGGLKQHMLVHTDERPISCDICFKGFKDKFTMQDHRKYHSDETPFKCDTCDKTFKRKISLQVHEKRHIKDYKMMCEICNRGFYTNAEYKLHMGSRHGQSSYICSICHKPLYDKCSLNKHMQTHVEGYKDPKYKCDLCGKSFLQERYLKNHIDKQHSDGSRREYVCDLCGKMLCSGTSLRTHQLLHQGIKPNKCHTCGKAFTLRSALMDHLRIHTGEKPYKCEHCNKAFTQRNTYVIHVRSHTGERPSNFLDLIYLVDFIEKLCEFMKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -