Dpar000495.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:2508130-2516400[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.025 2.3 10.2 3.7 1 23 102 124 102 124 0.95 2 19 0.00032 0.03 16.2 3.6 1 23 129 151 129 151 0.98 3 19 6.6e-05 0.0061 18.4 1.8 1 23 157 179 157 179 0.98 4 19 2.4e-05 0.0022 19.7 1.8 1 23 186 209 186 209 0.98 5 19 1.8e-05 0.0016 20.2 3.2 1 23 214 236 214 236 0.99 6 19 0.0038 0.35 12.8 4.6 1 23 245 268 245 268 0.95 7 19 0.002 0.18 13.7 0.4 1 23 273 295 273 295 0.98 8 19 1.2e-06 0.00011 23.9 0.1 1 23 301 323 301 323 0.98 9 19 0.0074 0.68 11.9 0.1 1 14 329 342 329 345 0.85 10 19 0.004 0.37 12.8 0.9 1 23 429 452 429 452 0.96 11 19 0.00014 0.013 17.3 2.4 1 23 457 479 457 479 0.98 12 19 4.5e-06 0.00041 22.0 0.4 1 23 485 507 485 507 0.97 13 19 0.017 1.6 10.7 4.2 1 23 514 537 514 537 0.96 14 19 7.1e-05 0.0066 18.3 5.0 1 23 542 564 542 564 0.99 15 19 0.00039 0.036 16.0 2.7 1 23 573 596 573 596 0.94 16 19 2e-06 0.00018 23.2 0.5 1 23 601 623 601 623 0.98 17 19 1.6e-07 1.5e-05 26.6 0.1 1 23 629 651 629 651 0.98 18 19 3.8e-05 0.0035 19.1 0.2 1 23 657 680 657 680 0.97 19 19 0.00087 0.081 14.8 1.7 1 23 686 708 686 708 0.98
Sequence Information
- Coding Sequence
- ATGACCTGCGCAGGAAAAGGAACGGATCTTTTACTGACCTTACCCGTAAACCAACATTTCCAACAACAAAGAAATGAGGAAGTAAATTTGAAACCCCTAGCAACTTACGAGACAAAAAACGAAACGTCAGATTTTTCAAGCGAGAGCAAGCCGGACATCGTCATGCAGAATCAGTTCATGCAGGATATCCCCAGAGCTCAAGTTCATCCGCAGAATTTCGTTTTAATGCCGATGATGCCGCAATATGTCGTAAACAAAACACTGCCGATGTTTCCTCTCGTAAACCCTTCCGTAGAACAGGTGTTTACGTGCGAAATTTGCCATCAGACCTTCGATACGTACCTACGTTTGCAAAAGCATGGCTACAAGCACAGGACGAGCAGATACAAGTGCGATAAATGCGAGAAATCTTTCATATTTTTGCACCAGCTGAAAATTCATAAGGTGACACACACCGACGATAAAAAATACCCCTGCGATAAGTGCGGCAAAACGCTGAAGACCCTGCACACGCTGAAAATACACTCGCGCGTGCACACGGAAGTCTCGAATTACTTCGAATGCGAAACTTGCAACAAGAAGTTCTCCACGATGGCCTCGCTTCGCGAACACACCAAGACGCAACACTTGAACATCACTTACAAGTGTGACGTTTGCAAGAAGGTGTATCGCCAGCTGCAAACGTTGAAGACGCACAAGCGAACGCACGACCCCCAATTCGTGGCCACCCCGTTCAAATGCGACCGGTGCGAGGCGAAATTCAAGCACAAGTGCAGCTTGAGGATCCACATGGCGCAGGTGCACATGGGCAAGCTGTACATGTGCGACATCTGCGGCAAGGAGATACTGTCCTCGACCGGTTTCAAGAGTCACATGAGGACGCACGCAGGCGAGAAGCCTTTCATTTGTGATATCTGCGGCAAGGCGTTCGTCATGAAAGAATTACTGAGGACGCACATCCGCGTGCACACTAAAGAGAAACCGTTTCCTTGCAAAGTATGCGGCAAAATGTTTTCGCAGTCGGGACTCACCGTAATCGACAATTCGAGCGCACCTTTATTAAACCAACAAGTGCAGGGGCAAAGTGAAGACACACCCGTCGGCGACAACCCGCAAGTTGTTCAACCGATTATAAAGAAGCTCATTTTAAATCCTGAATTTTTTCGGCGTCAAGGACTTTCACGAAACATCACCCTAGTGCCGGTGTTGTCTGGATCTGATGCCAGCCAGAGTTTCCCCAGCATTCGGTTGTTAACCGGCGTCGATTTTTCCTCGAGGGAAATGTTCAAGTGCACGATTTGCCAAGAAATTTTCGACAGTTACGGTCGATTGACCAGTCACAGATACAGGGCGCACAAGCAGAAGATATACAAGTGTGAAACGTGTGAGAAATCTTTCTATTTGCTTTCTCAGCTCAACACTCACAAGCAGAGTCACACTGATCACAACAAGTACCCTTGCGACATGTGCGACAAGATATTTAAGACCCCGGCTACGCTGAAGAACCACTCACGTTTACACGTTGGCCTGGAGAAGAAGTACCATTGCGACATGTGCAgtaaaaaatttacgaaattgcaCCTGGTTAGAGATCACATCAGCAGTGAGCACATGAACGTGAAGTAcaagtgtgacgtttgcgggaAGGAGTACCGTCAGAAGTGCACTTTGAGGATGCACAAAAAAACACACGATCCCCAATTTGTGTTGGCCGTGTTTAAGTGTGACCAGTGTGATTCGGAGTTTAAACACAGGAGTGCTTTGAGGAAGCACAAGTTGCTGGTGCACGTGGGCAAGCTGTACATGTGTGACATCTGCGGAAAGGAGATAACAAGCTCGAGCAGTTTCAAAAACCACATGAGGATTCACTCCGGCGAAAAGCCGTTCGTCTGTGAAATATGCGGCAAGGCGTTCGTCACGAAGGACTTGTTAAGGACACACGTGCGTGTGCACACCAAAGAGAAACCCTACCCTTGTAAGTTGTGTGGCAAAAAGTTCACGCAGGTTGGGTCCGTGCAGATTCATATACAGAGGGTGCACCAGCGTGAAAAATCATTCCAGTGCAACATCTGCAATAAGAAGTACCTATCGAAGGTTCAGCTGAAGGCCCACTCAAAAATGCACGGTACTCCTTTGTCTGAGTCATCATCAACTgttacgaaaatttaa
- Protein Sequence
- MTCAGKGTDLLLTLPVNQHFQQQRNEEVNLKPLATYETKNETSDFSSESKPDIVMQNQFMQDIPRAQVHPQNFVLMPMMPQYVVNKTLPMFPLVNPSVEQVFTCEICHQTFDTYLRLQKHGYKHRTSRYKCDKCEKSFIFLHQLKIHKVTHTDDKKYPCDKCGKTLKTLHTLKIHSRVHTEVSNYFECETCNKKFSTMASLREHTKTQHLNITYKCDVCKKVYRQLQTLKTHKRTHDPQFVATPFKCDRCEAKFKHKCSLRIHMAQVHMGKLYMCDICGKEILSSTGFKSHMRTHAGEKPFICDICGKAFVMKELLRTHIRVHTKEKPFPCKVCGKMFSQSGLTVIDNSSAPLLNQQVQGQSEDTPVGDNPQVVQPIIKKLILNPEFFRRQGLSRNITLVPVLSGSDASQSFPSIRLLTGVDFSSREMFKCTICQEIFDSYGRLTSHRYRAHKQKIYKCETCEKSFYLLSQLNTHKQSHTDHNKYPCDMCDKIFKTPATLKNHSRLHVGLEKKYHCDMCSKKFTKLHLVRDHISSEHMNVKYKCDVCGKEYRQKCTLRMHKKTHDPQFVLAVFKCDQCDSEFKHRSALRKHKLLVHVGKLYMCDICGKEITSSSSFKNHMRIHSGEKPFVCEICGKAFVTKDLLRTHVRVHTKEKPYPCKLCGKKFTQVGSVQIHIQRVHQREKSFQCNICNKKYLSKVQLKAHSKMHGTPLSESSSTVTKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -