Dpar000675.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284475.1:4089958-4097644[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.078 7.2 8.7 3.6 1 23 73 95 73 95 0.97
2 31 0.00021 0.019 16.8 5.7 1 23 99 121 99 121 0.99
3 31 0.00071 0.065 15.1 6.2 1 23 127 149 127 149 0.98
4 31 0.021 2 10.5 0.3 1 23 155 177 155 177 0.94
5 31 0.00013 0.012 17.5 4.1 1 23 183 205 183 205 0.98
6 31 0.09 8.3 8.5 0.1 1 21 211 231 211 232 0.94
7 31 6.2e-05 0.0057 18.5 0.7 1 23 293 315 293 315 0.97
8 31 0.00028 0.026 16.4 0.6 1 23 327 349 327 349 0.98
9 31 0.0046 0.42 12.6 5.6 1 23 355 377 355 378 0.95
10 31 0.00063 0.058 15.3 0.6 1 23 390 412 390 412 0.97
11 31 0.00097 0.089 14.7 0.9 1 23 424 446 424 446 0.98
12 31 0.00014 0.013 17.3 2.0 1 23 452 475 452 475 0.96
13 31 0.00022 0.02 16.7 0.6 1 23 483 505 483 505 0.97
14 31 0.00074 0.068 15.1 3.3 1 23 510 532 510 532 0.97
15 31 0.0014 0.13 14.2 0.5 1 23 545 567 545 567 0.98
16 31 0.13 12 8.0 0.1 5 23 571 589 570 589 0.95
17 31 0.00058 0.054 15.4 2.9 1 23 595 617 595 617 0.97
18 31 0.0005 0.046 15.6 0.9 1 23 630 652 630 652 0.98
19 31 0.0017 0.16 13.9 1.1 1 23 658 680 658 680 0.98
20 31 0.0046 0.42 12.6 2.9 1 23 686 708 686 708 0.95
21 31 0.0097 0.9 11.5 0.2 1 23 714 736 714 736 0.98
22 31 0.0014 0.13 14.2 6.2 1 23 742 764 742 764 0.98
23 31 0.0019 0.18 13.7 6.4 1 23 770 792 770 792 0.98
24 31 0.0062 0.57 12.2 2.7 1 23 798 821 798 821 0.96
25 31 0.032 3 9.9 0.6 1 23 879 901 879 901 0.97
26 31 0.0085 0.79 11.7 2.6 2 23 906 927 905 927 0.97
27 31 0.00055 0.051 15.5 0.2 1 23 933 955 933 955 0.99
28 31 0.00076 0.07 15.0 0.4 1 23 961 983 961 983 0.99
29 31 0.0066 0.61 12.1 2.5 1 23 989 1011 989 1011 0.99
30 31 0.19 17 7.5 3.5 1 23 1017 1039 1017 1039 0.96
31 31 0.0023 0.21 13.5 1.0 1 23 1045 1068 1045 1068 0.96

Sequence Information

Coding Sequence
ATGAAATCAGGAATAGCAGCACAAGGGTTGGGATTTCATTTAAACCAGAGAAAAAGgttTATTACAAACAGCACTGCACTTGTTGAGGAGAACAAGAGAGTCATTCCTGCCACAAAAAAGGAACACTGCGATTCTACGAAGAAGCATGTCTTAACGCATACCAAGAGAAATCTACTCGAACAAACGAAGAAGCCTACGGCGAAAGTTAAGGGACAATTCGTATGTGAGATTTGCGGTTTTAAAACAGATAAACACTGGTGTCTCAGGAAGCACCTCGACAGTCACGAGAGACCGTATCAGTGTGATCGCTGCGGCCATACGTTCGCCGCACATGCCCATTTGAAGTCGCACATGAGGCgacataccggcgagaaaccgtacAAGTGCAacgtttgcgattataaatgcactCAGTCCTGTCAGCTCTGGACGCACATGAAGCTACACACCGGCGCGAAGCCGTTTCTGTGTGACAAGTGCGATTACAGAGCTGCCCTGAAAGGTAGTCTCACGAAACATATGGTCTCACATTCCACCGAAAAGCCGTTCAAGTGTAACATCTGCGATTTCGAAACGAAGACCTCCAAACATTTAAAGAGGCACGTAAAAGTACACACGGGCGTGAAGGAATTCGAATGCAGCGCTTGCGCTATGAGATTTAATGATTCGCAGGGCTTGAGAAGGCATACGTTAGTTTTCAAATACCGATATTGCGATTACAAGACGAATTGTGCCAACATTCTCAAGAAACACGTTTGCacgcacaccggcgaaaaaCCGTACGAATGTAAATTATGCGACTGCAAGCCCGGAAACCTCAAGAGGCACATGAGGCTACATCATGCTAAGAAGAAAGACGAAGTGACAGAACCCGAGTTCGCATGTGAGGTTTGCAATTTCAAAACGGCGCAAGCTGATTATTTGAGGAGGCACATGAGAAGGCACGGTGATCAGAAACCGATTCGGAGTTCTTCGAAGTACAAATGTCAGTACTGTGATTATGAGGCGAGTCGTGCCAGCACCCTCAAGGACCACGTTCTtaggcacaccggcgagaagccgcaCGAATGTACATTGTGCGAGTACAGGTGCTCTCTGCCTGGAAATCTCAGGAGGCACGTGAGGCGACATCACGACAAGAAAAAAGACAAAGTGGCAGAATCCGAGTTCGCATGTGGGGTTTGTGATTTTAAAACGACGGAGGCCGATTATTTGAGGAAGCACATGAAAAGGCACAGCGGCGAACAGAAGCCGGTTCAGAGTTCGAAGTTCAAATGTCAGTACTGTGATTACGAGGCGAGTCGGGCCCGCACTCTCAAGGATCACCTTCTTaggcacaccggcgaaaagccgCACGAATGTAAACTGTGCGATTACAGGAGCACTATGCCCGGAAATCTCAAGAGGCACATGAGGCTACGTCATGCCAAGGAAGCCGAATCTGGGTTCGCATGTGAGGTTTGTGATTTTCAAACGACGCAAGCCGACTATTTGAGGCAGCACATGAAAAGACACGGCGATCAGCGGTTCGCTTGTAAATTGTGCGATTACAAATGCGTCCAGTCCCGAGACTTCAAAAGGCACATGATAATGCATGAGATGAAAGAAAAAGGCGAGGAATACGAATATAAATTCACGTGTGATATCTGCGGTTTTAAAACCATTCTAGCTGATTACTTGAGCAAACACATGAAGCAACACGCCGGTCAAAATTGCGATTATAAAGCGAATTCCCCCGCCGCTCTCAGGAAACACATGTTTACCCATagcggcgagaagccgttcgcaTGTAAATCGTGCAGTTACAGAAGCAGCACGTCCAGGAACCTCCAGAGGCACTTGAAAACACACATGGCGAAAGAAGAGGTCCAGGACGCTGACAAGAAATTCGTGTGTGAGGTCTGCAGTTTTAAAACCACTACGGCCAGATATCTGAGGAAACACATGTTGATACACAGCACCGAGAAGCCGTTTCAGTGCGACCGCTGCGGCCAAAAATTCTCCTCGAACAACATCTTAAAGATGCACATGGTGCGACATACCGGGGATAAACCGTACGAGTGCCACGTCTGCGGTTACAAATGTTATCAGGCCGGCACGATGAAGCGTCACCTTGTGCTGCACACCGGCGTGAAAACTTTTCAGTGCAACAAGTGCGATTATAAGGCTGCCGTAAGAGGTGCCATCACGAAACACATGGCCACGCATTCCACGGAGAAACCGTTCGAGTGCCACATTTGTAAATACAAGACGAAAACCCCGAATTGTTTGAAAAGtcacatgttaacgcacacaGGCGAGCGCTTGTATAAATGTAACACTTGCTGCAAGAGGTTCTCTCGTAGCAAGGACTTGAAAAAGCACACGTTGATACATACGGGGGAAAAGCCGTTCGCGTGCAACTTATGCGAGTACAGATCTACCCAGAAGTCAAACGTGACAATACACATGAAGCACAGACATAAGGAAGTTACTGCAAAAAGCGTTGGCATTGAAAGAGCACCTTTCGAAGAGAACGAAACCGTCCCTCTTACCACAAAAACGCAAACGAACATGAAGAAACACGTTTTAACATGCGAGTTGAAATATAGCAAATGTTTAAAACCTCACACGAAGGAGGAAGATCAAAAACGATTCGCATGTGAGATTTGCGGTTTCAAAACAGACAAACGTAGATATCTCAACGGCCACGTCAACAGGCACGGGAAATCGTGTCAGTGCGATCGCTGCGGCAATATGTTCAAGTCACTTGACATTTTGAAACTACACATGAGGCGACACACCGGCGAAAAACCGTACAAGTGCAACCTTTGCGGTTATGAATCTACTCAGCCAGGTACCCTCTTGTCTCACAGTAGGGTACACACCGGCGCGAAACCCTATCAGTGTGACAAATGCGATTACAGAGCTGCCCTGAAAGGAACCCTCACAAGGCATATGGTTACGCATTTCGCCGAAAGGCCGTTCAAGTGTAACCTCTGCGATTTTGATGCAAAAAGCTCCAGAACTTTAAAGAAACATGTAAAGAAACACACGGGCGAGAAGGAATTCGAGTGTAGTGTTTGCAGTAAGAGATTGGCCTGCTCCAAGAGCTTGAAAAGGCATATGTTCTTACATACGGGAGAGAAACCGTTTGCCTGTAATTTATGCGATTACAGATCTACTGAACAGTCAAATGTGAAAGTACACATGAAGTACAGACATAAGGAATGTGCAAATAAATTTGAACCAACATGA
Protein Sequence
MKSGIAAQGLGFHLNQRKRFITNSTALVEENKRVIPATKKEHCDSTKKHVLTHTKRNLLEQTKKPTAKVKGQFVCEICGFKTDKHWCLRKHLDSHERPYQCDRCGHTFAAHAHLKSHMRRHTGEKPYKCNVCDYKCTQSCQLWTHMKLHTGAKPFLCDKCDYRAALKGSLTKHMVSHSTEKPFKCNICDFETKTSKHLKRHVKVHTGVKEFECSACAMRFNDSQGLRRHTLVFKYRYCDYKTNCANILKKHVCTHTGEKPYECKLCDCKPGNLKRHMRLHHAKKKDEVTEPEFACEVCNFKTAQADYLRRHMRRHGDQKPIRSSSKYKCQYCDYEASRASTLKDHVLRHTGEKPHECTLCEYRCSLPGNLRRHVRRHHDKKKDKVAESEFACGVCDFKTTEADYLRKHMKRHSGEQKPVQSSKFKCQYCDYEASRARTLKDHLLRHTGEKPHECKLCDYRSTMPGNLKRHMRLRHAKEAESGFACEVCDFQTTQADYLRQHMKRHGDQRFACKLCDYKCVQSRDFKRHMIMHEMKEKGEEYEYKFTCDICGFKTILADYLSKHMKQHAGQNCDYKANSPAALRKHMFTHSGEKPFACKSCSYRSSTSRNLQRHLKTHMAKEEVQDADKKFVCEVCSFKTTTARYLRKHMLIHSTEKPFQCDRCGQKFSSNNILKMHMVRHTGDKPYECHVCGYKCYQAGTMKRHLVLHTGVKTFQCNKCDYKAAVRGAITKHMATHSTEKPFECHICKYKTKTPNCLKSHMLTHTGERLYKCNTCCKRFSRSKDLKKHTLIHTGEKPFACNLCEYRSTQKSNVTIHMKHRHKEVTAKSVGIERAPFEENETVPLTTKTQTNMKKHVLTCELKYSKCLKPHTKEEDQKRFACEICGFKTDKRRYLNGHVNRHGKSCQCDRCGNMFKSLDILKLHMRRHTGEKPYKCNLCGYESTQPGTLLSHSRVHTGAKPYQCDKCDYRAALKGTLTRHMVTHFAERPFKCNLCDFDAKSSRTLKKHVKKHTGEKEFECSVCSKRLACSKSLKRHMFLHTGEKPFACNLCDYRSTEQSNVKVHMKYRHKECANKFEPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-