Dpar039452.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284483.1:158233-159986[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 7.2e-06 0.00067 21.4 5.2 1 23 130 152 130 152 0.98
2 15 2e-07 1.8e-05 26.3 1.7 1 23 158 180 158 180 0.98
3 15 3.1e-05 0.0029 19.4 1.8 1 23 186 208 186 208 0.96
4 15 0.0002 0.018 16.9 7.0 1 23 214 236 214 236 0.98
5 15 3e-05 0.0027 19.5 0.2 1 23 242 264 242 264 0.98
6 15 7.8e-06 0.00072 21.3 1.8 1 23 270 292 270 292 0.99
7 15 4.3e-07 3.9e-05 25.3 0.3 1 23 300 322 300 322 0.98
8 15 1.8e-05 0.0017 20.1 5.0 1 23 328 350 328 350 0.99
9 15 1.9e-07 1.7e-05 26.4 1.0 1 23 356 378 356 378 0.99
10 15 9.7e-06 0.00089 21.0 1.1 1 23 384 406 384 406 0.99
11 15 1.7e-07 1.6e-05 26.5 1.2 1 23 412 434 412 434 0.98
12 15 0.0012 0.11 14.4 0.9 1 23 440 462 440 462 0.97
13 15 8.8e-05 0.0081 18.0 7.5 1 23 468 490 468 490 0.99
14 15 1.8e-07 1.6e-05 26.5 1.2 1 23 496 518 496 518 0.99
15 15 4.5e-06 0.00042 22.0 2.9 1 23 524 546 524 546 0.98

Sequence Information

Coding Sequence
ATGGAGTACTTTGAATTAGATCAATGTATCAAAGATAATATAAGGCATACTCCAAATCAAAAAAGTTTTCCAGAAGACAACAATGTAAAGTGTAATATTTTGAAAGCAACAAATAACAATGTAATACAGAAATCGAAAAATCACAATGCTGTAGAACAAGAAAATGAACGGGCAAGTGAAGAATCTGTTGATTCGTTTATTCCAGTAACTGATTATTTAGAAGTTGAGCATCAATACTGTTGCTGTGTTGAAGAGTCTCCGAGAAACAATCCCCCAGTCATAAAAAGTAATACGTCGGAagTCAGTTACATGCAGGATGACCCCAACGTTCTTCTTTTAAAAGATGAATACTCAATCGACTCAGAAAAATCTGGAGAAGAATTGCCGTTCAAGTGTGATCATTGTCAGCGCAGATTTCGTCAGAAAAGTAACTTGGCTTCACACACGAAACTTCACACAGGAGATCGACCGTACAAATGCGACACTTGTGGAAAACGCTTCACACAGAAGAGCAACTTAGATgcacataaaaaaattcacaCGGGTTTGAAGCAACACATATGCGAGCTATGCAACAAAGGCTTTAGCAGTAAGGGAAATTTGTCATCACATAAGAAAATCCATCTGGGAATAAGACCCCACAAGTGTGAGGTCTGTGGCATGTGCTTTCACAAAAAGATAACTTTGACGGAACATATGAGGACTCACACGGGTGAAAAGCCGTTCATATGCGAAATGTGTGGGAAAAGTTTTAGTTTACGCACAGTTTTGGTCATACACATTCGTTCACATACTGGAGAAAAGCCGTACACATGTGAAGTTTGCAATAAGGGATGCATTAAGAAAGCTGATTTGCGAAAGCACATGAAGATCCACATGGATTTTGTGAGCAAGCCATTTGCTTGTGAAGTTTGTCCAAAAGCGTTCAAGCAGCGTACACAATTGGTTCTACACATGCGTACTCATACGGGCGAGAAACCATATAAATGTAAACTGTGTGACAAATGTTTTAGCCAAAGCATAAGTCGTAAAATTCATATGAGATCACACACAGGTGAAAAACCATACCAGTGCGATGAGTGTGGGAAAGGTTTCTCAACAAAGGGTGACTTTGAACGACATAAAAAAATGCATAGTGGCGAGCGTCCGTTCGAATGTGAAACGTGCAATAAAGGTTTTATAAATTTACGATTTCTTAACCTACACATGCGTACACATACAGGTGAGAAACCATTCATGTGTACTGTATGTAGCAAGAGCTACAGTCAGAAACCAAACCTCACGGTGCACATGCGAACACACACTGGCGAGAAACCATTTGCCTGCACCGTATGTGCCAAGTGCTTTATGTCACGTGGAGATCTGATGATGCATGAAAAAATACACACCGGCATCAAACCTTTCAAATGTGAAACATGCCAGAAGCACTTTATTAAATTGAGTCACCTGCAAACGCACACTCGAACTCATACCGGGGAAAAACCATTTGAATGTGAAGTGTGTGGCAGGGCATTCTCACAAAAGTGCACGCTTATAATTCATATGAGGACTCACACTGGGGAGAAGCCTTTTGAATGTGAAATTTGTCAGAGGTGCTTTgcaaataaaggaaatttattGACACATAGAAAAAGACATTTAAGTCGATTTAAACCAGAAAGTGTTGAcacttaa
Protein Sequence
MEYFELDQCIKDNIRHTPNQKSFPEDNNVKCNILKATNNNVIQKSKNHNAVEQENERASEESVDSFIPVTDYLEVEHQYCCCVEESPRNNPPVIKSNTSEVSYMQDDPNVLLLKDEYSIDSEKSGEELPFKCDHCQRRFRQKSNLASHTKLHTGDRPYKCDTCGKRFTQKSNLDAHKKIHTGLKQHICELCNKGFSSKGNLSSHKKIHLGIRPHKCEVCGMCFHKKITLTEHMRTHTGEKPFICEMCGKSFSLRTVLVIHIRSHTGEKPYTCEVCNKGCIKKADLRKHMKIHMDFVSKPFACEVCPKAFKQRTQLVLHMRTHTGEKPYKCKLCDKCFSQSISRKIHMRSHTGEKPYQCDECGKGFSTKGDFERHKKMHSGERPFECETCNKGFINLRFLNLHMRTHTGEKPFMCTVCSKSYSQKPNLTVHMRTHTGEKPFACTVCAKCFMSRGDLMMHEKIHTGIKPFKCETCQKHFIKLSHLQTHTRTHTGEKPFECEVCGRAFSQKCTLIIHMRTHTGEKPFECEICQRCFANKGNLLTHRKRHLSRFKPESVDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01258284;
90% Identity
iTF_00465167; iTF_00465168;
80% Identity
-